| TGS-GapCloser: a fast and accurate gap closer for large genomes with low coverage of error-prone long reads M Xu, L Guo, S Gu, O Wang, R Zhang, BA Peters, G Fan, X Liu, X Xu, ... GigaScience 9 (9), giaa094, 2020 | 170 | 2020 |
| Protein and RNA dynamical fingerprinting KA Niessen, M Xu, DK George, MC Chen, AR Ferré-D’Amaré, EH Snell, ... Nature communications 10 (1), 1026, 2019 | 86 | 2019 |
| Comparison of long-read methods for sequencing and assembly of a plant genome V Murigneux, SK Rai, A Furtado, TJC Bruxner, W Tian, I Harliwong, H Wei, ... GigaScience 9 (12), giaa146, 2020 | 76 | 2020 |
| Moving in the right direction: protein vibrations steering function KA Niessen, M Xu, A Paciaroni, A Orecchini, EH Snell, AG Markelz Biophysical Journal 112 (5), 933-942, 2017 | 63 | 2017 |
| Terahertz optical measurements of correlated motions with possible allosteric function KA Niessen, M Xu, AG Markelz Biophysical reviews 7, 201-216, 2015 | 36 | 2015 |
| The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights C Shao, S Sun, K Liu, J Wang, S Li, Q Liu, BE Deagle, I Seim, A Biscontin, ... Cell 186 (6), 1279-1294. e19, 2023 | 31 | 2023 |
| TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads M Xu, L Guo, S Gu, O Wang, R Zhang, G Fan, X Xu, L Deng, X Liu BioRxiv, 831248, 2019 | 22 | 2019 |
| SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme L Guo, M Xu, W Wang, S Gu, X Zhao, F Chen, O Wang, X Xu, I Seim, ... BMC bioinformatics 22, 1-16, 2021 | 19 | 2021 |
| The complete and fully-phased diploid genome of a male Han Chinese C Yang, Y Zhou, Y Song, D Wu, Y Zeng, L Nie, P Liu, S Zhang, G Chen, ... Cell Research 33 (10), 745-761, 2023 | 18 | 2023 |
| The Temperature Dependent Photoswitching of a Classic Diarylethene Monitored by in Situ X-ray Diffraction JM Cox, IM Walton, DG Patel, M Xu, YS Chen, JB Benedict The Journal of Physical Chemistry A 119 (5), 884-888, 2015 | 12 | 2015 |
| Protein and RNA dynamical fingerprinting Nat KA Niessen, M Xu, DK George, MC Chen, AR Ferré-D’Amaré, EH Snell, ... Commun 10, 1026, 2019 | 6 | 2019 |
| VT3D: a visualization toolbox for 3D transcriptomic data L Guo, Y Li, Y Qi, Z Huang, K Han, X Liu, X Liu, M Xu, G Fan Journal of Genetics and Genomics 50 (9), 713-719, 2023 | 4 | 2023 |
| Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios M Xu, L Guo, X Du, L Li, BA Peters, L Deng, O Wang, F Chen, J Wang, ... Bioinformatics 37 (15), 2095-2102, 2021 | 4 | 2021 |
| Symbiont-screener: a reference-free tool to separate host sequences from symbionts for error-prone long reads M Xu, L Guo, Y Qi, C Shi, X Liu, J Chen, J Han, L Deng, X Liu, G Fan Frontiers in Marine Science 10, 133, 2023 | 3 | 2023 |
| Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics S Fang, M Xu, L Cao, X Liu, M Bezulj, L Tan, Z Yuan, Y Li, T Xia, L Guo, ... bioRxiv, 2023.12. 04.569485, 2023 | 3 | 2023 |
| Photo-switching of protein dynamical collectivity M Xu, D George, R Jimenez, A Markelz Photonics 8 (8), 302, 2021 | 3 | 2021 |
| THz microscopy measurements on inhibitor dependence of protein intramolecular modes KA Niessen, M Xu, E Snell, AG Markelz 2013 38th International Conference on Infrared, Millimeter, and Terahertz …, 2013 | 3 | 2013 |
| MetaTrass: A high‐quality metagenome assembler of the human gut microbiome by cobarcoding sequencing reads Y Qi, S Gu, Y Zhang, L Guo, M Xu, X Cheng, O Wang, Y Sun, J Chen, ... iMeta 1 (4), e46, 2022 | 2 | 2022 |
| Haplotype-Resolved Assembly for Synthetic Long Reads Using a Trio-Binning Strategy M Xu, L Guo, X Du, L Li, L Deng, O Wang, M Ni, H Yang, X Xu, X Liu, ... bioRxiv, 2020.06. 01.126995, 2020 | 2 | 2020 |
| Terahertz Light Fingerprints Biomolecular Dynamics Y Deng, M Xu, KA Niessen, DK George, AG Markelz CLEO: Science and Innovations, SW3D. 5, 2018 | 2 | 2018 |
