| HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia MD Galbraith, MA Allen, CL Bensard, X Wang, MK Schwinn, B Qin, ... Cell 153 (6), 1327-1339, 2013 | 365 | 2013 |
| Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms MA Allen, Z Andrysik, VL Dengler, HS Mellert, A Guarnieri, JA Freeman, ... Elife 3, e02200, 2014 | 262 | 2014 |
| Basal cell carcinomas in mice arise from hair follicle stem cells and multiple epithelial progenitor populations M Grachtchouk, J Pero, SH Yang, AN Ermilov, LE Michael, A Wang, ... The Journal of clinical investigation 121 (5), 1768-1781, 2011 | 214 | 2011 |
| A global analysis of C. elegans trans-splicing MA Allen, LDW Hillier, RH Waterston, T Blumenthal Genome research 21 (2), 255-264, 2011 | 192 | 2011 |
| Hedgehog signaling regulates sebaceous gland development M Allen, M Grachtchouk, H Sheng, V Grachtchouk, A Wang, L Wei, J Liu, ... The American journal of pathology 163 (6), 2173-2178, 2003 | 154 | 2003 |
| Human TFIIH kinase CDK7 regulates transcription-associated chromatin modifications CC Ebmeier, B Erickson, BL Allen, MA Allen, H Kim, N Fong, JR Jacobsen, ... Cell reports 20 (5), 1173-1186, 2017 | 126 | 2017 |
| Enhancer RNA profiling predicts transcription factor activity JG Azofeifa, MA Allen, JR Hendrix, JD Rubin, RD Dowell Genome research 28 (3), 334-344, 2018 | 103 | 2018 |
| Nuclear mechanosensing drives chromatin remodelling in persistently activated fibroblasts CJ Walker, C Crocini, D Ramirez, AR Killaars, JC Grim, BA Aguado, ... Nature biomedical engineering 5 (12), 1485-1499, 2021 | 96* | 2021 |
| Genes involved in pre-mRNA 3′-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen M Cui, MA Allen, A Larsen, M MacMorris, M Han, T Blumenthal Proceedings of the National Academy of Sciences 105 (43), 16665-16670, 2008 | 73 | 2008 |
| Detecting differential transcription factor activity from ATAC-Seq data IJ Tripodi, MA Allen, RD Dowell Molecules 23 (5), 1136, 2018 | 45 | 2018 |
| Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression 4 Sarah K. Sasse1, Margaret Gruca2, Mary A. Allen2, Vineela Kadiyala1 ... Genome Res., 2019 | 40 | 2019 |
| Identification and characterization of a novel anti-inflammatory lipid isolated from Mycobacterium vaccae, a soil-derived bacterium with immunoregulatory and … DG Smith, R Martinelli, GS Besra, PA Illarionov, I Szatmari, P Brazda, ... Psychopharmacology 236, 1653-1670, 2019 | 37 | 2019 |
| An annotation agnostic algorithm for detecting nascent RNA transcripts in GRO-seq JG Azofeifa, MA Allen, ME Lladser, RD Dowell IEEE/ACM transactions on computational biology and bioinformatics 14 (5 …, 2016 | 24 | 2016 |
| Polycistronic pre-mRNA processing in vitro: snRNP and pre-mRNA role reversal in trans-splicing EL Lasda, MA Allen, T Blumenthal Genes & development 24 (15), 1645-1658, 2010 | 20 | 2010 |
| Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA M Melnick, P Gonzales, J Cabral, MA Allen, RD Dowell, CD Link PLoS One 14 (4), e0206715, 2019 | 17 | 2019 |
| Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs JF Cardiello, GJ Sanchez, MA Allen, RD Dowell Transcription 11 (1), 3-18, 2020 | 15 | 2020 |
| FStitch: A fast and simple algorithm for detecting nascent RNA transcripts J Azofeifa, MA Allen, M Lladser, R Dowell Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014 | 13 | 2014 |
| Retrospective reflections of a whistleblower: Opinions on misconduct responses M Allen, R Dowell Accountability in Research 20 (5-6), 339-348, 2013 | 12 | 2013 |
| Extracellular matrix stiffness controls cardiac valve myofibroblast activation through epigenetic remodeling CJ Walker, D Batan, CT Bishop, D Ramirez, BA Aguado, ME Schroeder, ... Bioengineering & translational medicine 7 (3), e10394, 2022 | 11 | 2022 |
| RNA Pol II transcription model and interpretation of GRO-seq data ME Lladser, JG Azofeifa, MA Allen, RD Dowell Journal of mathematical biology 74, 77-97, 2017 | 10 | 2017 |
Robin DowellProfessor, University of Colorado BoulderVerified email at colorado.edu
