Keith Bradnam

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Genis ParraCNAG - CRGVerified email at cnag.crg.eu
Thomas KeaneResearch and Service Group LeaderVerified email at ebi.ac.uk
Zemin NingThe Wellcome Trust Sanger InstituteVerified email at sanger.ac.uk
Jeffrey Ross-IbarraProfessor, Dept. Evolution and Ecology, University of California DavisVerified email at ucdavis.edu
Daniël P. MeltersNational Institutes of HealthVerified email at ucdavis.edu
Natalie TelisGraduate Student, Stanford UniversityVerified email at stanford.edu
J. Graham RubyCalico Life Sciences LLCVerified email at calicolabs.com
Daniel LawsonImperial College LondonVerified email at imperial.ac.uk
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Paul M. SharpProfessor of Genetics, University of EdinburghVerified email at ed.ac.uk
Gudmundur A ThorissondeCODE Genetics, IcelandVerified email at decode.is
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Erich M. SchwarzAssistant Research Professor, Cornell UniversityVerified email at cornell.edu
Eimear KennyIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
Raymond LeeCalifornia Institute Of TechnologyVerified email at caltech.edu
Paul SternbergcaltechVerified email at caltech.edu
E. Han TanUniversity of MaineVerified email at maine.edu
Isabelle M HenryUC Davis, Project scientistVerified email at ucdavis.edu
Luca ComaiProfessor of Plant Biology, University of California DavisVerified email at ucdavis.edu
Ravi MaruthachalamIndian Institute of Science Education and Research (IISER), Thiruvananthapuram, Kerala, IndiaVerified email at iisertvm.ac.in

Keith Bradnam

The Royal College of Psychiatrists

Verified email at rcpsych.ac.uk - Homepage

Intron-mediated enhancement intron evolution genome analysis genome assembly science communication


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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes G Parra, K Bradnam, I Korf Bioinformatics 23 (9), 1061-1067, 2007	2229	2007
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	793	2013
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	632	2011
WormBase: a comprehensive resource for nematode research TW Harris, I Antoshechkin, T Bieri, D Blasiar, J Chan, WJ Chen, ... Nucleic acids research 38 (suppl_1), D463-D467, 2010	610*	2010
Assessing the gene space in draft genomes G Parra, K Bradnam, Z Ning, T Keane, I Korf Nucleic acids research 37 (1), 289-297, 2009	479	2009
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution DP Melters, KR Bradnam, HA Young, N Telis, MR May, JG Ruby, R Sebra, ... Genome biology 14, 1-20, 2013	465	2013
WormBase: a multi‐species resource for nematode biology and genomics TW Harris, N Chen, F Cunningham, M Tello‐Ruiz, I Antoshechkin, ... Nucleic acids research 32 (suppl_1), D411-D417, 2004	259	2004
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics N Chen, TW Harris, I Antoshechkin, C Bastiani, T Bieri, D Blasiar, ... Nucleic acids research 33 (suppl_1), D383-D389, 2005	243	2005
Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants G Parra, K Bradnam, AB Rose, I Korf Nucleic acids research 39 (13), 5328-5337, 2011	176	2011
Longer first introns are a general property of eukaryotic gene structure KR Bradnam, I Korf PloS one 3 (8), e3093, 2008	174	2008
Catastrophic chromosomal restructuring during genome elimination in plants EH Tan, IM Henry, M Ravi, KR Bradnam, T Mandakova, MPA Marimuthu, ... Elife 4, e06516, 2015	113	2015
G+ C content variation along and among Saccharomyces cerevisiae chromosomes. KR Bradnam, C Seoighe, PM Sharp, KH Wolfe Molecular biology and evolution 16 (5), 666-675, 1999	58	1999
Evidence for a DNA-based mechanism of intron-mediated enhancement AB Rose, S Emami, K Bradnam, I Korf Frontiers in plant science 2, 15883, 2011	51	2011
Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells N Varlakhanova, R Cotterman, K Bradnam, I Korf, PS Knoepfler Epigenetics & chromatin 4, 1-14, 2011	46	2011
WormBase as an integrated platform for the C. elegans ORFeome N Chen, D Lawson, K Bradnam, TW Harris, LD Stein Genome research 14 (10b), 2155-2161, 2004	24	2004
Codon usage in C. elegans PM Sharp C. elegans ll, 1053-1057, 1997	14	1997
UNIX and Perl to the rescue!: a field guide for the life sciences (and other data-rich pursuits) K Bradnam, I Korf Cambridge University Press, 2012	11	2012
WormBase: a comprehensive data resource for N Chen, TW Harris, I Antoshechkin, C Bastiani, T Bieri, D Blasiar, ... Caenorhabditis, 2005	8	2005
Genetic Map of Caenorhabditis elegans CK Chen, K Bradnam, R Durbin, J Hodgkin Caenorhabditis Genetics Center, St. Paul, 2003	4	2003
Adjustment of RNA‐Seq data for the effect of highly abundant transcripts: a case study in milk production (622.4) K Beck, G Turco, K Bradnam, M Rijnkels, L Nommsen‐Rivers, I Korf, ... The FASEB Journal 28, 622.4, 2014		2014

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