| Molecular recording of mammalian embryogenesis MM Chan, ZD Smith, S Grosswendt, H Kretzmer, TM Norman, B Adamson, ... Nature 570 (7759), 77-82, 2019 | 293 | 2019 |
| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 206 | 2023 |
| Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts JJ Quinn, MG Jones, RA Okimoto, S Nanjo, MM Chan, N Yosef, ... Science 371 (6532), eabc1944, 2021 | 204 | 2021 |
| Functional interpretation of single cell similarity maps D DeTomaso, MG Jones, M Subramaniam, T Ashuach, CJ Ye, N Yosef Nature Communications 10, 2019 | 183 | 2019 |
| Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min, R Ho, W Wu, ... Cell 185 (11), 1905-1923. e25, 2022 | 128 | 2022 |
| Inference of single-cell phylogenies from lineage tracing data using Cassiopeia MG Jones, A Khodaverdian, JJ Quinn, MM Chan, JA Hussmann, R Wang, ... Genome biology 21, 1-27, 2020 | 76 | 2020 |
| Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees W Gong, AA Granados, J Hu, MG Jones, O Raz, I Salvador-Martínez, ... Cell systems 12 (8), 810-826. e4, 2021 | 36 | 2021 |
| SELAM: simulation of epistasis and local adaptation during admixture with mate choice R Corbett-Detig, M Jones Bioinformatics 32 (19), 3035-3037, 2016 | 24 | 2016 |
| Robust sequence determinants of α-synuclein toxicity in yeast implicate membrane binding RW Newberry, T Arhar, J Costello, GC Hartoularos, AM Maxwell, ... ACS chemical biology 15 (8), 2137-2153, 2020 | 11 | 2020 |
| Reconstructing unobserved cellular states from paired single-cell lineage tracing and transcriptomics data K Ouardini, R Lopez, MG Jones, S Prillo, R Zhang, MI Jordan, N Yosef bioRxiv, 2021.05. 28.446021, 2021 | 8 | 2021 |
| Deciphering cell states and genealogies of human hematopoiesis C Weng, F Yu, D Yang, M Poeschla, LA Liggett, MG Jones, X Qiu, ... Springer Science and Business Media LLC, 2024 | 7 | 2024 |
| New Tools for Lineage Tracing in Cancer In Vivo MG Jones, D Yang, JS Weissman Annual Review of Cancer Biology 7, 111-129, 2023 | 4 | 2023 |
| Interactive, integrated analysis of single-cell transcriptomic and phylogenetic data with PhyloVision MG Jones, Y Rosen, N Yosef Cell reports methods 2 (4), 2022 | 4* | 2022 |
| PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors S Sinha, R Vegesna, S Mukherjee, AV Kammula, SR Dhruba, W Wu, ... Nature Cancer, 1-15, 2024 | | 2024 |
| CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing K Zhu, MG Jones, J Luebeck, X Bu, H Yi, KL Hung, ITL Wong, S Zhang, ... bioRxiv, 2024.02. 15.580594, 2024 | | 2024 |
| Disparate pathways for extrachromosomal DNA biogenesis and genomic DNA repair JC Rose, ITL Wong, B Daniel, MG Jones, KE Yost, KL Hung, EJ Curtis, ... bioRxiv, 2023 | | 2023 |
| Coordinated inheritance of extrachromosomal DNA species in human cancer cells KL Hung, MG Jones, ITL Wong, JT Lange, J Luebeck, E Scanu, BJ He, ... bioRxiv, 2023 | | 2023 |
| Following Tumor Progression Step-By-Step with CRISPR/Cas9-Based Single-Cell Lineage Tracing Technologies and Improved Computational Methods M Jones University of California, San Francisco, 2022 | | 2022 |
