Expanded encyclopedias of DNA elements in the human and mouse genomes Encode Project Consortium Nature, 2020 | 1421 | 2020 |
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ... Nucleic acids research 47 (D1), D729-D735, 2018 | 607 | 2018 |
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ... Nucleic Acids Research, gkw983, 2016 | 489 | 2016 |
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ... Genome Biology 21 (1), 1-14, 2020 | 182 | 2020 |
Integrative analyses of single-cell transcriptome and regulome using MAESTRO C Wang, D Sun, X Huang, C Wan, Z Li, Y Han, Q Qin, J Fan, X Qiu, Y Xie, ... Genome Biology 21 (1), 1-28, 2020 | 136 | 2020 |
Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer S Mei, CA Meyer, R Zheng, Q Qin, Q Wu, P Jiang, B Li, X Shi, B Wang, ... Cancer research 77 (21), e19-e22, 2017 | 125 | 2017 |
Imputation for transcription factor binding predictions based on deep learning Q Qin, J Feng PLOS Computational Biology 13 (2), e1005403, 2017 | 114 | 2017 |
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ... BMC bioinformatics 17 (1), 404, 2016 | 102 | 2016 |
Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 98 | 2020 |
MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes X Zheng, Q Zhao, HJ Wu, W Li, H Wang, CA Meyer, QA Qin, H Xu, C Zang, ... Genome biology 15 (7), 419, 2014 | 96 | 2014 |
Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles S Wang, C Zang, T Xiao, J Fan, S Mei, Q Qin, Q Wu, X Li, K Xu, HH He, ... Genome Research 26 (10), 1417-1429, 2016 | 89 | 2016 |
CRISPR-DO for genome-wide CRISPR design and optimization J Ma, J Köster, Q Qin, S Hu, W Li, C Chen, Q Cao, J Wang, S Mei, Q Liu, ... Bioinformatics 32 (21), 3336-3338, 2016 | 61 | 2016 |
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse Q Wang, J Huang, H Sun, J Liu, J Wang, Q Wang, Q Qin, S Mei, C Zhao, ... Nucleic acids research 42 (D1), D450-D458, 2014 | 49 | 2014 |
Clinical utility of 24-h rapid trio-exome sequencing for critically ill infants H Wang, Y Qian, Y Lu, Q Qin, G Lu, G Cheng, P Zhang, L Yang, B Wu, ... npj Genomic Medicine 5 (1), 1-6, 2020 | 48 | 2020 |
High-dimensional genomic data bias correction and data integration using MANCIE C Zang, T Wang, K Deng, B Li, Q Qin, T Xiao, S Zhang, CA Meyer, HH He, ... Nature communications 7, 2016 | 44 | 2016 |
Integrative analysis reveals the transcriptional collaboration between EZH2 and E2F1 in the regulation of cancer-related gene expression H Xu, K Xu, HH He, C Zang, CH Chen, Y Chen, Q Qin, S Wang, C Wang, ... Molecular Cancer Research 14 (2), 163-172, 2016 | 38 | 2016 |
Single-cell analysis and functional characterization uncover the stem cell hierarchies and developmental origins of rhabdomyosarcoma Y Wei, Q Qin, C Yan, MN Hayes, SP Garcia, H Xi, D Do, AH Jin, TC Eng, ... Nature Cancer, 1-15, 2022 | 29 | 2022 |
Survival Motor Neuron Gene Copy Number Analysis by Exome Sequencing: Assisting Spinal Muscular Atrophy Diagnosis and Carrier Screening B Liu, Y Lu, B Wu, L Yang, R Liu, H Wang, X Dong, G Li, Q Qin, W Zhou The Journal of Molecular Diagnostics, 2020 | 21 | 2020 |
Single-cell imaging of T cell immunotherapy responses in vivo C Yan, Q Yang, S Zhang, DG Millar, EJ Alpert, D Do, A Veloso, ... Journal of Experimental Medicine 218 (10), e20210314, 2021 | 18 | 2021 |
singlecellVR: interactive visualization of single-cell data in virtual reality DF Stein, H Chen, ME Vinyard, Q Qin, RD Combs, Q Zhang, L Pinello Frontiers in genetics, 1992, 2021 | 16 | 2021 |