| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 156 | 2011 |
| MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data M Ohue, Y Matsuzaki, N Uchikoga, T Ishida, Y Akiyama Protein and peptide letters 21 (8), 766-778, 2014 | 83 | 2014 |
| MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments Y Matsuzaki, N Uchikoga, M Ohue, T Shimoda, T Sato, T Ishida, ... Source code for biology and medicine 8, 1-8, 2013 | 32 | 2013 |
| Electric charge balance mechanism of extended soluble proteins N Uchikoga, SY Takahashi, R Ke, M Sonoyama, S Mitaku Protein science 14 (1), 74-80, 2005 | 32 | 2005 |
| Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis Y Matsuzaki, M Ohue, N Uchikoga, Y Akiyama Protein and peptide letters 21 (8), 790-798, 2014 | 27 | 2014 |
| Rigid-docking approaches to explore protein–protein interaction space Y Matsuzaki, N Uchikoga, M Ohue, Y Akiyama Network Biology, 33-55, 2017 | 13 | 2017 |
| Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes N Uchikoga, T Hirokawa BMC bioinformatics 11, 1-10, 2010 | 12 | 2010 |
| Re-docking scheme for generating near-native protein complexes by assembling residue interaction fingerprints N Uchikoga, Y Matsuzaki, M Ohue, T Hirokawa, Y Akiyama PLoS One 8 (7), e69365, 2013 | 10 | 2013 |
| Specificity of broad protein interaction surfaces for proteins with multiple binding partners N Uchikoga, Y Matsuzaki, M Ohue, Y Akiyama Biophysics and physicobiology 13, 105-115, 2016 | 9 | 2016 |
| Evaluation of consrank-like scoring functions for rescoring ensembles of protein–protein docking poses G Launay, M Ohue, J Prieto Santero, Y Matsuzaki, C Hilpert, N Uchikoga, ... Frontiers in molecular biosciences 7, 559005, 2020 | 8 | 2020 |
| Vestiges of primordial words in base sequences of modern genomes N Uchikoga, A Suyama Genome Informatics 7, 242-243, 1996 | 3 | 1996 |
| Rescoring ensembles of protein-protein docking poses using consensus approaches G Launay, M Ohue, JP Santero, Y Matsuzaki, C Hilpert, N Uchikoga, ... bioRxiv, 2020.04. 24.059469, 2020 | 2 | 2020 |
| Prediction system for dumbbell-type proteins: SOSUIdumbbell N Uchikoga, S Takahashi, K Runcong, F Akazawa, M Sonoyama, ... Genome Informatics 12, 328-329, 2001 | 2 | 2001 |
| Gene has its inherent significantly repetitive tuples N Uchikoga, A Suyama Genome Informatics 9, 388-389, 1998 | 1 | 1998 |
| Distribution of Significantly Repetitive Tuples Implying N Uchikoga, A Suyama Genome Informatics 8, 350-351, 1997 | 1 | 1997 |
| Interaction Surfaces of Proteins Involved in Bacterial Chemotaxis with Rigid-Body Docking Decoys N Uchikoga, Y Matsuzaki, M Ohue, Y Akiyama Biophysical Journal 112 (3), 290a, 2017 | | 2017 |
| A Docking Based Approach to Analyze Interaction Surfaces of Virus-Host Protein-Protein Interactions Y Matsuzaki, J Simm, N Uchikoga, Y Akiyama Biophysical Journal 112 (3), 451a-452a, 2017 | | 2017 |
| Re-Docking by Analyzing the Profile of Protein-Protein Interaction Y Amano, W Nemoto, N Uchikoga Biophysical Journal 112 (3), 451a, 2017 | | 2017 |
| Analysis of Physico-Chemical Properties of Protein Docking Decoys Generated by Rigid-Body Docking N Uchikoga, Y Matsuzaki, M Ohue, Y Akiyama Biophysical Journal 110 (3), 327a, 2016 | | 2016 |
| Megadock 4.0. An Ultra-High-Performance Protein-Protein Docking Software for Heterogeneous Supercomputers M Ohue, Y Matsuzaki, N Uchikoga, T Ishida, Y Akiyama Biophysical Journal 110 (3), 327a, 2016 | | 2016 |
Masahito OhueTokyo Institute of TechnologyVerified email at c.titech.ac.jp
