| Tximeta: Reference sequence checksums for provenance identification in RNA-seq MI Love, C Soneson, PF Hickey, LK Johnson, NT Pierce, L Shepherd, ... PLoS computational biology 16 (2), e1007664, 2020 | 188 | 2020 |
| Large-scale sequence comparisons with sourmash NT Pierce, L Irber, T Reiter, P Brooks, CT Brown F1000Research 8, 2019 | 140 | 2019 |
| Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history CA Elliger, TA Richmond, ZN Lebaric, NT Pierce, JV Sweedler, WF Gilly Toxicon 57 (2), 311-322, 2011 | 59 | 2011 |
| Transcriptome‐wide patterns of divergence during allopatric evolution RJ Pereira, FS Barreto, NT Pierce, M Carneiro, RS Burton Molecular Ecology 25 (7), 1478-1493, 2016 | 52 | 2016 |
| Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets DM Portik, CT Brown, NT Pierce-Ward BMC bioinformatics 23 (1), 541, 2022 | 37 | 2022 |
| Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers L Irber, PT Brooks, T Reiter, NT Pierce-Ward, MR Hera, D Koslicki, ... BioRxiv, 2022.01. 11.475838, 2022 | 36 | 2022 |
| Streamlining data-intensive biology with workflow systems T Reiter, PT Brooks, L Irber, SEK Joslin, CM Reid, C Scott, CT Brown, ... GigaScience 10 (1), giaa140, 2021 | 36 | 2021 |
| Marine natural product honaucin A attenuates inflammation by activating the Nrf2-ARE pathway SJ Mascuch, PD Boudreau, TM Carland, NT Pierce, J Olson, ME Hensler, ... Journal of natural products 81 (3), 506-514, 2017 | 29 | 2017 |
| Recovery from hybrid breakdown reveals a complex genetic architecture of mitonuclear incompatibilities RJ Pereira, TG Lima, NT Pierce‐Ward, L Chao, RS Burton Molecular Ecology 30 (23), 6403-6416, 2021 | 26 | 2021 |
| Development of Embryonic Market Squid, Doryteuthis opalescens, under Chronic Exposure to Low Environmental pH and [O2] MO Navarro, GT Kwan, O Batalov, CY Choi, NT Pierce, LA Levin PLoS One 11 (12), e0167461, 2016 | 20 | 2016 |
| Role of TRP channels in dinoflagellate mechanotransduction JB Lindström, NT Pierce, MI Latz The Biological Bulletin 233 (2), 151-167, 2017 | 17 | 2017 |
| Large-scale sequence comparisons with sourmash. F1000Res 8: 1006 NT Pierce, L Irber, T Reiter, P Brooks, CT Brown | 13 | 2019 |
| Ten simple rules and a template for creating workflows-as-applications MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ... PLoS computational biology 18 (12), e1010705, 2022 | 12 | 2022 |
| Debiasing fracminhash and deriving confidence intervals for mutation rates across a wide range of evolutionary distances MR Hera, T Pierce, D Koslicki bioRxiv, 2022.01. 11.475870, 2022 | 11 | 2022 |
| Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash MR Hera, NT Pierce-Ward, D Koslicki Genome research 33 (7), 1061-1068, 2023 | 10 | 2023 |
| Single-cell transcriptomics for the 99.9% of species without reference genomes OB Botvinnik, VNP Vemuri, NT Pierce, PA Logan, S Nafees, L Karanam, ... Biorxiv, 2021.07. 09.450799, 2021 | 6 | 2021 |
| Large-scale sequence comparisons with sourmash. F1000Res. 2019; 8: 1006 NT Pierce, L Irber, T Reiter, P Brooks, CT Brown PubMed Abstract| Publisher Full Text| Free Full Text, 0 | 6 | |
| Sourmash branchwater enables lightweight petabyte-scale sequence search L Irber, NT Pierce-Ward, CT Brown bioRxiv, 2022.11. 02.514947, 2022 | 4 | 2022 |
| Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease TE Reiter, L Irber, AA Gingrich, D Haynes, NT Pierce-Ward, PT Brooks, ... bioRxiv, 2022.06. 30.498290, 2022 | 4 | 2022 |
| Biogeographic distribution of five Antarctic Cyanobacteria using large-scale k-mer searching with sourmash branchwater J Lumian, D Sumner, C Grettenberger, AD Jungblut, L Irber, ... BioRxiv, 2022.10. 27.514113, 2022 | 3 | 2022 |
