| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 612 | 2020 |
| Protocols for molecular modeling with Rosetta3 and RosettaScripts BJ Bender, A Cisneros III, AM Duran, JA Finn, D Fu, AD Lokits, BK Mueller, ... Biochemistry 55 (34), 4748-4763, 2016 | 199 | 2016 |
| Meta-Research: Releasing a preprint is associated with more attention and citations for the peer-reviewed article DY Fu, JJ Hughey Elife 8, e52646, 2019 | 142 | 2019 |
| Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record JJ Hughey, SD Rhoades, DY Fu, L Bastarache, JC Denny, Q Chen BMC genomics 20 (1), 1-7, 2019 | 34 | 2019 |
| Predictive Power of Different Types of Experimental Restraints in Small Molecule Docking: A Review DY Fu, J Meiler Journal of chemical information and modeling 58 (2), 225-233, 2018 | 29 | 2018 |
| Development of Erasin: a chromone-based STAT3 inhibitor which induces apoptosis in Erlotinib-resistant lung cancer cells C Lis, S Rubner, M Roatsch, A Berg, T Gilcrest, D Fu, E Nguyen, ... Scientific reports 7 (1), 1-10, 2017 | 23 | 2017 |
| RosettaLigandEnsemble: A Small-Molecule Ensemble-Driven Docking Approach DY Fu, J Meiler ACS Omega 3 (4), 3655-3664, 2018 | 22 | 2018 |
| Commonly used fluoroquinolones cross-react with urine drug screens for opiates, buprenorphine, and amphetamines JM Colby, PC Patel, DY Fu, NJ Rutherford Clinical biochemistry 68, 50-54, 2019 | 16 | 2019 |
| The STAT5b Linker Domain Mediates the Selectivity of Catechol Bisphosphates for STAT5b over STAT5a J Gräb, A Berg, L Blechschmidt, B Klüver, S Rubner, DY Fu, J Meiler, ... ACS chemical biology 14 (4), 796-805, 2019 | 12 | 2019 |
| Simphony: simulating large-scale, rhythmic data JM Singer, DY Fu, JJ Hughey PeerJ 7, e6985, 2019 | 6 | 2019 |
| Improving Protein-Small Molecule Structure Predictions with Ensemble Methods, or Using Computers to Guess How Tiny Things Fit Together DY Fu Vanderbilt University, 2018 | 1 | 2018 |
| Protein-Ligand Docking with Protein-based and Ligand-based Structure Activity Relationships DY Fu, J Meiler bioRxiv, 394874, 2018 | | 2018 |
| Leveraging quantitative structure-activity relationships (QSARs) for small molecule docking into G-protein coupled receptors (GPCRs) D Fu, J Meiler ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016 | | 2016 |
| Macromolecular modeling and design in Rosetta: new methods and frameworks D Gront, H Park, D Baker, S Ovchinnikov, SR Burman, J Gray, ... | | |
