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Brandon Barker
Brandon Barker
Center for Advanced Computing, Cornell University
Verified email at cornell.edu
Title
Cited by
Cited by
Year
Message passing interface (mpi)
B Barker
Workshop: high performance computing on stampede 262, 2015
2092015
Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network
BD Heavner, K Smallbone, B Barker, P Mendes, LP Walker
BMC systems biology 6, 1-13, 2012
1822012
Dynamic epistasis for different alleles of the same gene
L Xu, B Barker, Z Gu
Proceedings of the National Academy of Sciences 109 (26), 10420-10425, 2012
332012
Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach
S Zanders, X Ma, A RoyChoudhury, RD Hernandez, A Demogines, ...
Genetics 186 (2), 493-503, 2010
282010
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data
BE Barker, N Sadagopan, Y Wang, K Smallbone, CR Myers, H Xi, ...
Computational biology and chemistry 59, 98-112, 2015
252015
Computational approaches for understanding energy metabolism
AA Shestov, B Barker, Z Gu, JW Locasale
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 5 (6), 733-750, 2013
142013
Red Cloud and Aristotle: campus clouds and federations
R Knepper, S Mehringer, A Brazier, B Barker, R Reynolds
Proceedings of the Humans in the Loop: Enabling and Facilitating Research on …, 2019
112019
Dynamic Epistasis under Varying Environmental Perturbations
B Barker, L Xu, Z Gu
PLOS One 10, e0114911, 2015
102015
Reproducible and portable workflows for scientific computing and HPC in the cloud
P Vaillancourt, B Wineholt, B Barker, P Deliyannis, J Zheng, A Suresh, ...
Practice and Experience in Advanced Research Computing, 311-320, 2020
92020
Predicted metabolic function of the gut microbiota of Drosophila melanogaster
NYD Ankrah, BE Barker, J Song, C Wu, JG McMullen, AE Douglas
Msystems 6 (3), 10.1128/msystems. 01369-20, 2021
82021
Self-scaling clusters and reproducible containers to enable scientific computing
PZ Vaillancourt, JE Coulter, R Knepper, B Barker
2020 IEEE High Performance Extreme Computing Conference (HPEC), 1-8, 2020
62020
Using Containers to Create More Interactive Online Training and Education Materials
S Mehringer, B Barker
Practice and Experience in Advanced Research Computing, 246-251, 2020
22020
Reproducible and Portable Workflows for Scientific Computing and HPC in the Cloud
MVM MPI, P Vaillancourt, B Wineholt, B Barker, P Deliyannis, J Zheng, ...
2020
Advances In Genome-Scale Modeling Applied To Expression-Based Flux Estimation And Epistasis Prediction
B Barker
2014
Genomic analysis of gene regulation complexity
B Barker, J Lund
BMC Bioinformatics 9 (7), P4, 2008
2008
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