| Biophysical studies of the c-MYC NHE III1 promoter: model quadruplex interactions with a cationic porphyrin MW Freyer, R Buscaglia, K Kaplan, D Cashman, LH Hurley, EA Lewis Biophysical journal 92 (6), 2007 | 169 | 2007 |
| A new bisintercalating anthracycline with picomolar DNA binding affinity J Portugal, DJ Cashman, JO Trent, N Ferrer-Miralles, T Przewloka, I Fokt, ... Journal of medicinal chemistry 48 (26), 8209-8219, 2005 | 78 | 2005 |
| A computational model for anthracycline binding to DNA: tuning groove-binding intercalators for specific sequences DJ Cashman, GE Kellogg Journal of medicinal chemistry 47 (6), 1360-1374, 2004 | 64 | 2004 |
| Biophysical characterization of an ensemble of intramolecular i-motifs formed by the human c-MYC NHE III1 P1 promoter mutant sequence JM Dettler, R Buscaglia, JJ Cui, D Cashman, M Blynn, EA Lewis Biophysical journal 99 (2), 561-567, 2010 | 49 | 2010 |
| Binding of netropsin to several DNA constructs: Evidence for at least two different 1: 1 complexes formed from an–AATT-containing ds-DNA construct and a single minor groove … MW Freyer, R Buscaglia, D Cashman, S Hyslop, WD Wilson, JB Chaires, ... Biophysical chemistry 126 (1-3), 186-196, 2007 | 49 | 2007 |
| Molecular modeling and biophysical analysis of the c-MYC NHE-III1 silencer element DJ Cashman, R Buscaglia, MW Freyer, J Dettler, LH Hurley, EA Lewis Journal of molecular modeling 14, 93-101, 2008 | 47 | 2008 |
| Hydropathic analysis of the free energy differences in anthracycline antibiotic binding to DNA DJ Cashman, JN Scarsdale, GE Kellogg Nucleic acids research 31 (15), 4410-4416, 2003 | 32 | 2003 |
| Which aminoglycoside ring is most important for binding? A hydropathic analysis of gentamicin, paromomycin, and analogues DJ Cashman, JP Rife, GE Kellogg Bioorganic & medicinal chemistry letters 11 (2), 119-122, 2001 | 31 | 2001 |
| General library-based Monte Carlo technique enables equilibrium sampling of semi-atomistic protein models AB Mamonov, D Bhatt, DJ Cashman, Y Ding, DM Zuckerman The Journal of Physical Chemistry B 113 (31), 10891-10904, 2009 | 30 | 2009 |
| Intrinsically disordered electronegative clusters improve stability and binding specificity of RNA-binding proteins S Zaharias, Z Zhang, K Davis, T Fargason, D Cashman, T Yu, J Zhang Journal of Biological Chemistry 297 (2), 2021 | 20 | 2021 |
| Molecular interactions between photosystem I and ferredoxin: an integrated energy frustration and experimental model DJ Cashman, T Zhu, RF Simmerman, C Scott, BD Bruce, J Baudry Journal of Molecular Recognition 27 (10), 597-608, 2014 | 19 | 2014 |
| Structural and metal ion effects on human topoisomerase IIα inhibition by α-(N)-heterocyclic thiosemicarbazones WH Morris, L Ngo, JT Wilson, W Medawala, AR Brown, JD Conner, ... Chemical research in toxicology 32 (1), 90-99, 2018 | 18 | 2018 |
| Binding Mechanisms of Electron Transport Proteins with Cyanobacterial Photosystem I: An Integrated Computational and Experimental Model K Kapoor, DJ Cashman, L Nientimp, BD Bruce, J Baudry The Journal of Physical Chemistry B 122 (3), 1026-1036, 2018 | 9 | 2018 |
| Ligand docking and scoring in DNA oligonucleotides. Binding of doxorubicin and modeled analogs to optimize sequence specificity GE Kellogg, JN Scarsdale, DJ Cashman MEDICINAL CHEMISTRY RESEARCH 9 (7-8), 592-603, 1999 | 9 | 1999 |
| Homology modeling of the CheW coupling protein of the chemotaxis signaling complex DJ Cashman, DR Ortega, IB Zhulin, J Baudry PLoS One 8 (8), e70705, 2013 | 8 | 2013 |
| Thermal motions of the E. coli glucose-galactose binding protein studied using well-sampled semi-atomistic simulations D J Cashman, A B Mamonov, D Bhatt, D M Zuckerman Current topics in medicinal chemistry 11 (2), 211-220, 2011 | 3 | 2011 |
| Understanding Water and Its Many Roles in Biological Structure: Ways to Exploit a Resource for Drug Discovery MH Ahmed, A Amadasi, AS Bayden, DJ Cashman, P Cozzini, C Da, ... Computer-Aided Drug Discovery, 85-110, 2016 | 1 | 2016 |
| Docking and hydropathic analysis of Hoechst 33258 with double-stranded RNA DJ Cashman, JP Rife, GE Kellogg Medicinal chemistry research 12 (8), 445-456, 2003 | 1 | 2003 |
| Computational Design and Docking of Hamigeromycin B Natural Product Derivatives in 26 Human Kinases M Edmonds, D Cashman, J Carrick Proceedings of Student Research and Creative Inquiry Day 6, 2022 | | 2022 |
| Computational Analysis of Wild‐type and Selenium‐Incorporated Down‐regulated Proteins in E. coli AR Hill, DJ Cashman, JO Boles The FASEB Journal 34 (S1), 1-1, 2020 | | 2020 |
