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| arcasHLA: high-resolution HLA typing from RNAseq R Orenbuch, I Filip, D Comito, J Shaman, I Pe’er, R Rabadan Bioinformatics 36 (1), 33-40, 2020 | 118 | 2020 |
| Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. J Zhao, AX Chen, RD Gartrell, AM Silverman, L Aparicio, T Chu, ... Nature medicine 25 (6), 1022-1022, 2019 | 23 | 2019 |
| ProteinGym: large-scale benchmarks for protein fitness prediction and design P Notin, A Kollasch, D Ritter, L Van Niekerk, S Paul, H Spinner, N Rollins, ... Advances in Neural Information Processing Systems 36, 2024 | 9 | 2024 |
| Proteingym: Large-scale benchmarks for protein design and fitness prediction P Notin, AW Kollasch, D Ritter, L van Niekerk, S Paul, H Spinner, ... bioRxiv, 2023.12. 07.570727, 2023 | 9 | 2023 |
| Pervasiveness of HLA allele-specific expression loss across tumor types I Filip, A Wang, O Kravets, R Orenbuch, J Zhao, TE Perea-Chamblee, ... Genome Medicine 15 (1), 8, 2023 | 8 | 2023 |
| HLA typing from RNA sequencing and applications to cancer R Orenbuch, I Filip, R Rabadan Bioinformatics for Cancer Immunotherapy: Methods and Protocols, 71-92, 2020 | 6 | 2020 |
| HLA allele-specific expression loss in tumors can shorten survival and hinder immunotherapy I Filip, R Orenbuch, J Zhao, G Manji, EL de Maturana, N Malats, KP Olive, ... medRxiv, 2020.09. 30.20204875, 2020 | 3 | 2020 |
| Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders. R Orenbuch, AW Kollasch, HD Spinner, CA Shearer, TA Hopf, ... Medrxiv, 2023.11. 27.23299062, 2023 | 1 | 2023 |
| Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma (vol 25, pg 462, 2019) J Zhao, AX Chen, RD Gartrell, AM Silverman, L Aparicio, T Chu, ... Nature medicine 25 (6), 1022-1022, 2019 | 1 | 2019 |
| Guidelines for releasing a variant effect predictor BJ Livesey, M Badonyi, M Dias, J Frazer, S Kumar, K Lindorff-Larsen, ... arXiv preprint arXiv:2404.10807, 2024 | | 2024 |
