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Michael M. Hoffman
Michael M. Hoffman
Chair and Senior Scientist, University Health Network/Associate Professor, University of Toronto
Verified email at utoronto.ca - Homepage
Title
Cited by
Year
Understanding metric-related pitfalls in image analysis validation
A Reinke, MD Tizabi, M Baumgartner, M Eisenmann, D Heckmann-Nötzel, ...
Nature methods, 1-13, 2024
192024
Simulating Cell-Free Chromatin Using Breast and Colorectal Cancer Preclinical Models for Cancer-Specific Biomarker Discovery
S Main, S De Michino, L Penny, R Kridel, D Cescon, M Hoffman, M Lupien, ...
The Journal of Liquid Biopsy 1, 100114, 2023
2023
Epigenetic reprogramming of a distal developmental enhancer cluster drives SOX2 overexpression in breast and lung adenocarcinoma
LE Abatti, P Lado-Fernández, L Huynh, M Collado, MM Hoffman, ...
Nucleic Acids Research 51 (19), 10109-10131, 2023
2*2023
Second trimester cell-free placental DNA methylation profiles in preterm birth subtypes
SL Wilson, SY Shen, N Yuen, M Agopian, S Girard, T Triche Jr, ...
Placenta 140, e13, 2023
2023
Human papillomavirus integration transforms chromatin to drive oncogenesis
M Karimzadeh, C Arlidge, A Rostami, M Lupien, SV Bratman, ...
Genome Biology 24 (1), 142, 2023
152023
Exploring the merits of research performance measures that comply with the San Francisco Declaration on Research Assessment and strategies to overcome barriers of adoption …
H Boury, M Albert, RHC Chen, JCL Chow, R DaCosta, MM Hoffman, ...
Health Research Policy and Systems 21 (1), 43, 2023
12023
DORA-compliant measures of research quality and impact to assess the performance of researchers in biomedical institutions: Review of published research, international best …
AR Gagliardi, RHC Chen, H Boury, M Albert, J Chow, RS DaCosta, ...
Plos one 18 (5), e0270616, 2023
22023
Community consensus on core open science practices to monitor in biomedicine
KD Cobey, S Haustein, J Brehaut, U Dirnagl, DL Franzen, LG Hemkens, ...
Plos Biology 21 (1), e3001949, 2023
222023
Simulating cell-free chromatin using preclinical models for cancer-specific biomarker discovery
SD De Michino, SC Main, L Penny, R Kridel, DW Cescon, MM Hoffman, ...
bioRxiv, 2023.11. 16.567416, 2023
2023
Segzoo: a turnkey system that summarizes genome annotations
M Mendez, Y Liu, M Asenjo Ponce de León, MM Hoffman
bioRxiv, 2023.10. 03.559369, 2023
2023
Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls
SL Wilson, SY Shen, L Harmon, JM Burgener, T Triche, SV Bratman, ...
Cell Reports Methods 2 (9), 2022
32022
Metrics reloaded: Pitfalls and recommendations for image analysis validation
L Maier-Hein, B Menze
arXiv. org, 2022
111*2022
DORA-compliant measures to assess research quality and impact in biomedical institutions: review of published research, international best practice and Delphi survey
AR Gagliardi, RHC Chen, H Boury, M Albert, J Chow, RS DaCosta, ...
medRxiv, 2022.06. 16.22276440, 2022
42022
Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome
M Karimzadeh, MM Hoffman
Genome Biology 23 (1), 126, 2022
392022
Assessing and assuring interoperability of a genomics file format
YN Niu, EG Roberts, D Denisko, MM Hoffman
Bioinformatics 38 (13), 3327-36, 2022
42022
Metrics reloaded-a new recommendation framework for biomedical image analysis validation
A Reinke, L Maier-Hein, E Christodoulou, B Glocker, P Scholz, F Isensee, ...
Medical imaging with deep learning, 2022
112022
The browser extensible data (BED) format
J Niu, D Denisko, MM Hoffman
File Format Stand 1, 8, 2022
52022
Establishing a core set of open science practices in biomedicine: a modified Delphi study (preprint)
K Cobey, S Haustein, J Brehaut, U Dirnagl, D Franzen, L Hemkens, ...
2022
Automated identification of cell-type–specific genes and alternative promoters
M Mendez, J Harshbarger, MM Hoffman
bioRxiv, 2021.12. 01.470587, 2021
2021
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1262021
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