| Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana K Jean-Baptiste, JL McFaline-Figueroa, CM Alexandre, MW Dorrity, ... The plant cell 31 (5), 993-1011, 2019 | 294 | 2019 |
| Massively multiplex chemical transcriptomics at single-cell resolution SR Srivatsan, JL McFaline-Figueroa, V Ramani, L Saunders, J Cao, ... Science 367 (6473), 45-51, 2020 | 239 | 2020 |
| Dimensionality reduction by UMAP to visualize physical and genetic interactions MW Dorrity, LM Saunders, C Queitsch, S Fields, C Trapnell Nature communications 11 (1), 1537, 2020 | 174 | 2020 |
| A single-cell transcriptome atlas for zebrafish development DR Farnsworth, LM Saunders, AC Miller Developmental biology 459 (2), 100-108, 2020 | 174 | 2020 |
| Inferring causal gene regulatory networks from coupled single-cell expression dynamics using scribe X Qiu, A Rahimzamani, L Wang, B Ren, Q Mao, T Durham, ... Cell systems 10 (3), 265-274. e11, 2020 | 116 | 2020 |
| Thyroid hormone regulates distinct paths to maturation in pigment cell lineages LM Saunders, AK Mishra, AJ Aman, VM Lewis, MB Toomey, JS Packer, ... Elife 8, e45181, 2019 | 106 | 2019 |
| Notch regulates BMP responsiveness and lateral branching in vessel networks via SMAD6 KP Mouillesseaux, DS Wiley, LM Saunders, LA Wylie, EJ Kushner, ... Nature communications 7 (1), 13247, 2016 | 97 | 2016 |
| Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors AD Kakebeen, AD Chitsazan, MC Williams, LM Saunders, AE Wills Elife 9, e52648, 2020 | 53 | 2020 |
| Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision LI Volkov, JS Kim-Han, LM Saunders, D Poria, AEO Hughes, VJ Kefalov, ... Proceedings of the National Academy of Sciences 117 (26), 15262-15269, 2020 | 49 | 2020 |
| Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores VM Lewis, LM Saunders, TA Larson, EJ Bain, SL Sturiale, D Gur, ... Proceedings of the National Academy of Sciences 116 (24), 11806-11811, 2019 | 44 | 2019 |
| Towards inferring causal gene regulatory networks from single cell expression measurements X Qiu, A Rahimzamani, L Wang, Q Mao, T Durham, JL McFaline-Figueroa, ... BioRxiv, 426981, 2018 | 37 | 2018 |
| Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes T Shi, MO Beaulieu, LM Saunders, P Fabian, C Trapnell, N Segil, ... Elife 12, e82978, 2023 | 15 | 2023 |
| A-kinase-anchoring protein 1 (dAKAP1)-based signaling complexes coordinate local protein synthesis at the mitochondrial surface L Gabrovsek, KB Collins, S Aggarwal, LM Saunders, HT Lau, D Suh, ... Journal of Biological Chemistry 295 (31), 10749-10765, 2020 | 15 | 2020 |
| Proteostasis governs differential temperature sensitivity across embryonic cell types MW Dorrity, LM Saunders, M Duran, SR Srivatsan, E Barkan, DL Jackson, ... Cell 186 (23), 5015-5027. e12, 2023 | 9 | 2023 |
| Deep molecular, cellular and temporal phenotyping of developmental perturbations at whole organism scale LM Saunders, SR Srivatsan, M Duran, MW Dorrity, B Ewing, T Linbo, ... BioRxiv, 2022.08. 04.502764, 2022 | 9 | 2022 |
| Thyroid hormone regulates abrupt skin morphogenesis during zebrafish postembryonic development AJ Aman, M Kim, LM Saunders, DM Parichy Developmental biology 477, 205-218, 2021 | 9 | 2021 |
| Embryo-scale reverse genetics at single-cell resolution LM Saunders, SR Srivatsan, M Duran, MW Dorrity, B Ewing, TH Linbo, ... Nature 623 (7988), 782-791, 2023 | 6 | 2023 |
| Single-cell, whole-embryo phenotyping of mammalian developmental disorders X Huang, J Henck, C Qiu, VKA Sreenivasan, S Balachandran, OV Amarie, ... Nature 623 (7988), 772-781, 2023 | 5 | 2023 |
| Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin AJ Aman, LM Saunders, AA Carr, S Srivatasan, C Eberhard, B Carrington, ... Elife 12, RP86670, 2023 | 5 | 2023 |
| Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy JL McFaline-Figueroa, S Srivatsan, AJ Hill, M Gasperini, DL Jackson, ... Cell Genomics 4 (2), 2024 | 3 | 2024 |
