Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling AW Zhang, C O’Flanagan, EA Chavez, JLP Lim, N Ceglia, A McPherson, ... Nature methods 16 (10), 1007-1015, 2019 | 271 | 2019 |
Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses CH O’Flanagan, KR Campbell, AW Zhang, F Kabeer, JLP Lim, J Biele, ... Genome biology 20, 1-13, 2019 | 207 | 2019 |
Clonal decomposition and DNA replication states defined by scaled single-cell genome sequencing E Laks, A McPherson, H Zahn, D Lai, A Steif, J Brimhall, J Biele, B Wang, ... Cell 179 (5), 1207-1221. e22, 2019 | 179 | 2019 |
Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires E Laks, H Zahn, D Lai, A McPherson, A Steif, J Brimhall, J Biele, B Wang, ... BioRxiv, 411058, 2018 | 20 | 2018 |
Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers AW Zhang, C O'Flanagan, E Chavez, JLP Lim, A McPherson, M Wiens, ... bioRxiv, 521914, 2019 | 8 | 2019 |