| 3DNA: a software package for the analysis, rebuilding and visualization of three‐dimensional nucleic acid structures XJ Lu, WK Olson Nucleic acids research 31 (17), 5108-5121, 2003 | 1931 | 2003 |
| DNA sequence-dependent deformability deduced from protein–DNA crystal complexes WK Olson, AA Gorin, XJ Lu, LM Hock, VB Zhurkin Proceedings of the National Academy of Sciences 95 (19), 11163-11168, 1998 | 1245 | 1998 |
| 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures XJ Lu, WK Olson Nature protocols 3 (7), 1213-1227, 2008 | 702 | 2008 |
| A standard reference frame for the description of nucleic acid base-pair geometry WK Olson, M Bansal, SK Burley, RE Dickerson, M Gerstein, SC Harvey, ... Journal of molecular biology 313 (1), 229-237, 2001 | 687 | 2001 |
| A-form conformational motifs in ligand-bound DNA structures XJ Lu, Z Shakked, WK Olson Journal of molecular biology 300 (4), 819-840, 2000 | 425 | 2000 |
| Web 3DNA—a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures G Zheng, XJ Lu, WK Olson Nucleic acids research 37 (suppl 2), W240-W246, 2009 | 332 | 2009 |
| DSSR: an integrated software tool for dissecting the spatial structure of RNA XJ Lu, HJ Bussemaker, WK Olson Nucleic acids research 43 (21), e142, 2015 | 271 | 2015 |
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster C Moorman, LV Sun, J Wang, E De Wit, W Talhout, LD Ward, F Greil, ... Proceedings of the National Academy of Sciences 103 (32), 12027-12032, 2006 | 231 | 2006 |
| Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures S Li, WK Olson, XJ Lu Nucleic acids research 47 (W1), W26-W34, 2019 | 214 | 2019 |
| DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures CA Hunter, XJ Lu Journal of molecular biology 265 (5), 603-619, 1997 | 150 | 1997 |
| Resolving the discrepancies among nucleic acid conformational analyses XJ Lu, WK Olson Journal of molecular biology 285 (4), 1563-1575, 1999 | 122 | 1999 |
| Structure and conformation of helical nucleic acids: analysis program (SCHNAaP) XJ Lu, MA El Hassan, CA Hunter Journal of molecular biology 273 (3), 668-680, 1997 | 101 | 1997 |
| Bending of DNA by asymmetric charge neutralization: all-atom energy simulations KM Kosikov, AA Gorin, XJ Lu, WK Olson, GS Manning Journal of the American Chemical Society 124 (17), 4838-4847, 2002 | 75 | 2002 |
| Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors JF Kribelbauer, XJ Lu, R Rohs, RS Mann, HJ Bussemaker Journal of molecular biology 432 (6), 1801-1815, 2020 | 74 | 2020 |
| Analyzing and Building Nucleic Acid Structures with 3DNA AV Colasanti, XJ Lu, WK Olson Journal of visualized experiments: JoVE, e4401, 2013 | 61 | 2013 |
| Structure and conformation of helical nucleic acids: rebuilding program (SCHNArP) XJ Lu, MA El Hassan, CA Hunter Journal of molecular biology 273 (3), 681-691, 1997 | 61 | 1997 |
| Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression A Boorsma, XJ Lu, A Zakrzewska, FM Klis, HJ Bussemaker PLoS One 3 (9), e3112, 2008 | 59 | 2008 |
| Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal JM Benevides, G Chan, XJ Lu, WK Olson, MA Weiss, GJ Thomas Jr Biochemistry 39 (3), 537-547, 2000 | 51 | 2000 |
| Overview of nucleic acid analysis programs XJ Lu, MS Babcock, WK Olson Journal of Biomolecular Structure and Dynamics 16 (4), 833-843, 1999 | 51 | 1999 |
| Transitions of Double-Stranded DNA Between the A- and B-Forms JT Waters, XJ Lu, R Galindo-Murillo, JC Gumbart, HD Kim, ... The Journal of Physical Chemistry B 120 (33), 8449-8456, 2016 | 48 | 2016 |
Stephen K. Burley, M.D., D.Phil.Institute for Quantitative Biomedicine, Rutgers UniversityVerified email at proteomics.rutgers.edu
