| Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8 O Zimmerman, MI Zimmerman, S Raju, CA Nelson, JM Errico, EA Madden, ... Cell 186 (22), 4818-4833. e25, 2023 | 4 | 2023 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 269 | 2023 |
| Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation ZS Wallace, J Davis, AM Niewiadomska, RD Olson, M Shukla, R Stevens, ... Frontiers in bioinformatics 2, 1020189, 2022 | 8 | 2022 |
| Genomic evolution of the Coronaviridae family CM Zmasek, EJ Lefkowitz, A Niewiadomska, RH Scheuermann Virology 570, 123-133, 2022 | 21 | 2022 |
| DOMAIN-ARCHITECTURE AWARE INFERENCE OF ORTHOLOGS (DAIO) CM Zmasek, DM Knipe, PE Pellett, RH Scheuermann | | 2019 |
| Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO) CM Zmasek, DM Knipe, PE Pellett, RH Scheuermann Virology 529, 29-42, 2019 | 25 | 2019 |
| Hepatitis C virus database and bioinformatics analysis tools in the virus pathogen resource (ViPR) Y Zhang, C Zmasek, G Sun, CN Larsen, RH Scheuermann Hepatitis C Virus Protocols, 47-69, 2019 | 10 | 2019 |
| Influenza Research Database: An integrated bioinformatics resource for influenza virus research Y Zhang, BD Aevermann, TK Anderson, DF Burke, G Dauphin, Z Gu, S He, ... Nucleic acids research 45 (D1), D466-D474, 2017 | 329 | 2017 |
| Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase A Sheydina, RY Eberhardt, DJ Rigden, Y Chang, Z Li, CC Zmasek, ... BMC bioinformatics 15, 1-10, 2014 | 16 | 2014 |
| Phylogenomic analysis of glycogen branching and debranching enzymatic duo CM Zmasek, A Godzik BMC Evolutionary Biology 14, 183, 2014 | 25 | 2014 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014 | 69 | 2014 |
| Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient A Stoltzfus, H Lapp, N Matasci, H Deus, B Sidlauskas, CM Zmasek, ... BMC bioinformatics 14, 1-17, 2013 | 47 | 2013 |
| Divergent evolution of protein conformational dynamics in dihydrofolate reductase G Bhabha, DC Ekiert, M Jennewein, CM Zmasek, LM Tuttle, G Kroon, ... Nature structural & molecular biology 20 (11), 1243-1249, 2013 | 170 | 2013 |
| aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity S Kuraku, CM Zmasek, O Nishimura, K Katoh Nucleic acids research 41 (W1), W22-W28, 2013 | 697 | 2013 |
| Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient B O'Meara, MS Rosenberg, MW Pennell, G Vaidya, CO Webb, K Cranston, ... | | 2013 |
| Evolution of the Animal Apoptosis Network CM Zmasek, A Godzik Cold Spring Harbor Perspectives in Biology 5 (3), 2013 | 84 | 2013 |
| The 3rd DBCLS BioHackathon: improving life science data integration with semantic Web technologies T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ... Journal of biomedical semantics 4 (1), 6, 2013 | 49 | 2013 |
| This Déjà Vu Feeling—Analysis of Multidomain Protein Evolution in Eukaryotic Genomes CM Zmasek, A Godzik PLOS Computational Biology 8 (11), e1002701, 2012 | 44 | 2012 |
| A mighty small heart: the cardiac proteome of adult Drosophila melanogaster A Cammarato, CH Ahrens, NN Alayari, E Qeli, J Rucker, MC Reedy, ... PloS one 6 (4), e18497, 2011 | 118 | 2011 |
| TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog Q Zhang, CM Zmasek, X Cai, A Godzik Developmental & Comparative Immunology, 2011 | 80 | 2011 |
