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Jeremy P. Gygi
Jeremy P. Gygi
PhD Student of Computational Biology & Bioinformatics, Yale University
Verified email at yale.edu - Homepage
Title
Cited by
Cited by
Year
ACP acylation is an acetyl-CoA-dependent modification required for electron transport chain assembly
JG Van Vranken, SM Nowinski, KJ Clowers, MY Jeong, Y Ouyang, ...
Molecular cell 71 (4), 567-580. e4, 2018
812018
Web-based search tool for visualizing instrument performance using the triple knockout (TKO) proteome standard
JP Gygi, Q Yu, J Navarrete-Perea, R Rad, SP Gygi, JA Paulo
Journal of proteome research 18 (2), 687-693, 2018
412018
Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study
A Ozonoff, J Schaenman, ND Jayavelu, CE Milliren, CS Calfee, CB Cairns, ...
EBioMedicine 83, 2022
332022
A triple knockout isobaric-labeling quality control platform with an integrated online database search
JP Gygi, R Rad, J Navarrete-Perea, S Younesi, SP Gygi, JA Paulo
Journal of the American Society for Mass Spectrometry 31 (7), 1344-1349, 2020
172020
The immune signatures data resource, a compendium of systems vaccinology datasets
J Diray-Arce, HER Miller, E Henrich, B Gerritsen, MP Mulè, S Fourati, ...
Scientific Data 9 (1), 635, 2022
162022
Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients
J Diray-Arce, S Fourati, ND Jayavelu, R Patel, C Maguire, AC Chang, ...
Cell Reports Medicine 4 (6), 2023
122023
Methods and systems for locating positions
T Cowley, C Chlebek, G Duncan, J Gygi, A Scharman
US Patent App. 11/841,304, 2009
112009
Assessing interference in isobaric tag‐based sample multiplexing using an 18‐plex interference standard
J Navarrete‐Perea, X Liu, R Rad, JP Gygi, SP Gygi, JA Paulo
Proteomics 22 (7), 2100317, 2022
82022
Predictive overfitting in immunological applications: Pitfalls and solutions
JP Gygi, SH Kleinstein, L Guan
Human Vaccines & Immunotherapeutics 19 (2), 2251830, 2023
52023
Magnetic easy step in/out snow board binding
AJ Scharman, TM Smith, AM Prinos, CE Hughes, JS Rice, ZJ Atanasoff, ...
US Patent App. 12/214,772, 2010
32010
Integrated longitudinal multi-omics study identifies immune programs associated with COVID-19 severity and mortality in 1152 hospitalized participants
JP Gygi, C Maguire, RK Patel, P Shinde, A Konstorum, CP Shannon, L Xu, ...
bioRxiv, 2023.11. 03.565292, 2023
22023
IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition
BS Haslund-Gourley, K Woloszczuk, J Hou, J Connors, G Cusimano, ...
Nature communications 15 (1), 404, 2024
12024
SPEAR: a Sparse Supervised Bayesian Factor Model for Multi-omic Integration.
JP Gygi, A Konstorum, S Pawar, SH Kleinstein, L Guan
Biorxiv: the Preprint Server for Biology, 2023
12023
Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality
JP Gygi, C Maguire, RK Patel, P Shinde, A Konstorum, CP Shannon, L Xu, ...
The Journal of Clinical Investigation 134 (9), 2024
2024
A supervised Bayesian factor model for the identification of multi-omics signatures
JP Gygi, A Konstorum, S Pawar, E Aron, SH Kleinstein, L Guan
Bioinformatics, btae202, 2024
2024
A multi-omics systems vaccinology resource to develop and test computational models of immunity
P Shinde, F Soldevila, J Reyna, M Aoki, M Rasmussen, L Willemsen, ...
Cell Reports Methods 4 (3), 2024
2024
A systems vaccinology resource to develop and test computational models of immunity
P Shinde, F Soldevila, J Reyna, M Aoki, M Rasmussen, L Willemsen, ...
bioRxiv, 2023
2023
Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study (preprint)
A Ozonoff, J Schaenman, ND Jayavelu, CE Milliren, CS Calfee, CB Cairns, ...
2022
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