| A pause sequence enriched at translation start sites drives transcription dynamics in vivo MH Larson, RA Mooney, JM Peters, T Windgassen, D Nayak, CA Gross, ... Science 344 (6187), 1042-1047, 2014 | 313 | 2014 |
| The elemental mechanism of transcriptional pausing J Saba, XY Chua, TV Mishanina, D Nayak, TA Windgassen, RA Mooney, ... Elife 8, e40981, 2019 | 74 | 2019 |
| Trigger loop of RNA polymerase is a positional, not acid–base, catalyst for both transcription and proofreading TV Mishanina, MZ Palo, D Nayak, RA Mooney, R Landick Proceedings of the National Academy of Sciences 114 (26), E5103-E5112, 2017 | 56 | 2017 |
| Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase D Nayak, M Voss, T Windgassen, RA Mooney, R Landick Molecular cell 50 (6), 882-893, 2013 | 49 | 2013 |
| A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases D Nayak, Q Guo, R Sousa Journal of biological chemistry 284 (20), 13641-13647, 2009 | 49 | 2009 |
| Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase TA Windgassen, RA Mooney, D Nayak, M Palangat, J Zhang, R Landick Nucleic acids research 42 (20), 12707-12721, 2014 | 42 | 2014 |
| CBR antimicrobials inhibit RNA polymerase via at least two bridge-helix cap-mediated effects on nucleotide addition B Bae, D Nayak, A Ray, A Mustaev, R Landick, SA Darst Proceedings of the National Academy of Sciences 112 (31), E4178-E4187, 2015 | 39 | 2015 |
| Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release Q Guo, D Nayak, LG Brieba, R Sousa Journal of molecular biology 353 (2), 256-270, 2005 | 37 | 2005 |
| Co-chaperone Hsp70/Hsp90-organizing protein (Hop) is required for transposon silencing and Piwi-interacting RNA (piRNA) biogenesis JA Karam, RY Parikh, D Nayak, D Rosenkranz, VK Gangaraju Journal of Biological Chemistry 292 (15), 6039-6046, 2017 | 33 | 2017 |
| Functional architecture of T7 RNA polymerase transcription complexes D Nayak, Q Guo, R Sousa Journal of molecular biology 371 (2), 490-500, 2007 | 17 | 2007 |
| Mechanism of T7 RNAP pausing and termination at the T7 concatemer junction: a local change in transcription bubble structure drives a large change in transcription complex … D Nayak, S Siller, Q Guo, R Sousa Journal of molecular biology 376 (2), 541-553, 2008 | 8 | 2008 |
| Conformational mechanisms in T7 RNA polymerase transcription D Nayak The University of Texas Health Science Center at San Antonio, 2009 | 1 | 2009 |
| Conformational Mechanisms in T7 RNA Polymerase Transcription: A Dissertation D Nayak UTHSC, 2008 | | 2008 |
| Regulation of Transcription by the Jaw and SI3 Domains through Interactions with the Trigger Loop Structure in E. coli RNA Polymerase M Voss, D Nayak, R Landick | | |
