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Chet B Birger
Chet B Birger
Broad Institute
Verified email at broadinstitute.org
Title
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Cited by
Year
The molecular signatures database hallmark gene set collection
A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo
Cell systems 1 (6), 417-425, 2015
84382015
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
9962017
Genetic and transcriptional evolution alters cancer cell line drug response
U Ben-David, B Siranosian, G Ha, H Tang, Y Oren, K Hinohara, ...
Nature 560 (7718), 325-330, 2018
8082018
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
4622020
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
4472019
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
3902021
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3252020
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
3132020
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
2772021
Thorvaldsdó ttir, H
A Liberzon, C Birger
Ghandi, M., Mesirov, JP, and Tamayo, P, 417-425, 2015
2362015
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer cell 39 (3), 361-379. e16, 2021
2202021
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
1912021
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst 1: 417–425
A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo
1242015
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 2015; 1: 417–25
A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo
112
Characterizing genomic alterations in cancer by complementary functional associations
JW Kim, OB Botvinnik, O Abudayyeh, C Birger, J Rosenbluh, Y Shrestha, ...
Nature biotechnology 34 (5), 539-546, 2016
1012016
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 2015; 1 (6): 417–25
A Liberzon, C Birger, H Thorvaldsdottir, M Ghandi, JP Mesirov, P Tamayo
92
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness
Y Li, TSM Lih, SM Dhanasekaran, R Mannan, L Chen, M Cieslik, Y Wu, ...
Cancer Cell 41 (1), 139-163. e17, 2023
542023
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 180 (1), 207, 2020
522020
FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs
C Birger, M Hanna, E Salinas, J Neff, G Saksena, D Livitz, D Rosebrock, ...
bioRxiv, 209494, 2017
392017
Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
J Vivian, A Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
bioRxiv, 062497, 2016
262016
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