The molecular signatures database hallmark gene set collection A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo Cell systems 1 (6), 417-425, 2015 | 8438 | 2015 |
Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 996 | 2017 |
Genetic and transcriptional evolution alters cancer cell line drug response U Ben-David, B Siranosian, G Ha, H Tang, Y Oren, K Hinohara, ... Nature 560 (7718), 325-330, 2018 | 808 | 2018 |
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 462 | 2020 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 447 | 2019 |
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 390 | 2021 |
Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 325 | 2020 |
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 313 | 2020 |
Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 277 | 2021 |
Thorvaldsdó ttir, H A Liberzon, C Birger Ghandi, M., Mesirov, JP, and Tamayo, P, 417-425, 2015 | 236 | 2015 |
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 220 | 2021 |
A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 191 | 2021 |
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst 1: 417–425 A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo | 124 | 2015 |
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 2015; 1: 417–25 A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo | 112 | |
Characterizing genomic alterations in cancer by complementary functional associations JW Kim, OB Botvinnik, O Abudayyeh, C Birger, J Rosenbluh, Y Shrestha, ... Nature biotechnology 34 (5), 539-546, 2016 | 101 | 2016 |
The molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst. 2015; 1 (6): 417–25 A Liberzon, C Birger, H Thorvaldsdottir, M Ghandi, JP Mesirov, P Tamayo | 92 | |
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness Y Li, TSM Lih, SM Dhanasekaran, R Mannan, L Chen, M Cieslik, Y Wu, ... Cancer Cell 41 (1), 139-163. e17, 2023 | 54 | 2023 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 52 | 2020 |
FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs C Birger, M Hanna, E Salinas, J Neff, G Saksena, D Livitz, D Rosebrock, ... bioRxiv, 209494, 2017 | 39 | 2017 |
Rapid and efficient analysis of 20,000 RNA-seq samples with Toil J Vivian, A Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... bioRxiv, 062497, 2016 | 26 | 2016 |