| An atlas of human metabolism JL Robinson, P Kocabaş, H Wang, PE Cholley, D Cook, A Nilsson, ... Science signaling 13 (624), eaaz1482, 2020 | 272 | 2020 |
| Genome-scale metabolic network reconstruction of model animals as a platform for translational research H Wang, JL Robinson, P Kocabas, J Gustafsson, M Anton, PE Cholley, ... Proceedings of the National Academy of Sciences 118 (30), e2102344118, 2021 | 72 | 2021 |
| Sources of variation in cell-type RNA-Seq profiles J Gustafsson, F Held, JL Robinson, E Björnson, R Jörnsten, J Nielsen PLoS One 15 (9), e0239495, 2020 | 27 | 2020 |
| Expansion of the yeast modular cloning toolkit for CRISPR-based applications, genomic integrations and combinatorial libraries M Otto, C Skrekas, M Gossing, J Gustafsson, V Siewers, F David ACS synthetic biology 10 (12), 3461-3474, 2021 | 19 | 2021 |
| Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data J Gustafsson, M Anton, F Roshanzamir, R Jörnsten, EJ Kerkhoven, ... Proceedings of the National Academy of Sciences 120 (6), e2217868120, 2023 | 17 | 2023 |
| BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq J Gustafsson, J Robinson, J Nielsen, L Pachter Genome Biology 22 (1), 174, 2021 | 6* | 2021 |
| kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq DK Sullivan, KHJ Min, KE Hjörleifsson, L Luebbert, G Holley, L Moses, ... bioRxiv, 2023 | 5 | 2023 |
| Metabolic collaboration between cells in the tumor microenvironment has a negligible effect on tumor growth J Gustafsson, F Roshanzamir, A Hagnestål, SM Patel, OI Daudu, ... The Innovation 5 (2), 2024 | 3* | 2024 |
| Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0 Y Chen, J Gustafsson, A Tafur Rangel, M Anton, I Domenzain, ... Nature Protocols, 1-39, 2024 | 3 | 2024 |
| Replicating Rare Software Failures with Exploratory Visual GUI Testing E Alégroth, J Gustafsson, H Ivarsson, R Feldt IEEE Software 34 (5), 53-59, 2017 | 3 | 2017 |
| DSAVE: Detection of misclassified cells in single-cell RNA-Seq data J Gustafsson, J Robinson, JS Inda-Diaz, E Björnson, R Jörnsten, ... Plos one 15 (12), e0243360, 2020 | 1 | 2020 |
| Single-cell omics analysis with genome-scale metabolic modeling Y Chen, J Gustafsson, J Yang, J Nielsen, EJ Kerkhoven Current Opinion in Biotechnology 86, 103078, 2024 | | 2024 |
| Brain energy metabolism is optimized to minimize the cost of enzyme synthesis and transport J Gustafsson, JL Robinson, H Zetterberg, J Nielsen Proceedings of the National Academy of Sciences 121 (7), e2305035121, 2024 | | 2024 |
| Genome‐scale metabolic models applied for human health and biopharmaceutical engineering F Li, Y Chen, J Gustafsson, H Wang, Y Wang, C Zhang, X Xing Quantitative Biology 11 (4), 363-375, 2023 | | 2023 |
| Multiomic single-cell analysis identifies von Willebrand factor and TIM3-expressing BCR-ABL1+ CML stem cells MS Nilsson, H Komic, J Gustafsson, Z Sheybani, S Paul, O Rolfson, ... bioRxiv, 2023.09. 14.557507, 2023 | | 2023 |
| Utilization of single-cell RNA-Seq and genome-scale modeling for investigating cancer metabolism J Gustafsson PQDT-Global, 2022 | | 2022 |
