| The Proteomics Identifications (PRIDE) database and associated tools: status in 2013 JA Vizcaíno, RG Côté, A Csordas, JA Dianes, A Fabregat, JM Foster, ... Nucleic Acids Research 41 (D1), D1063-D1069, 2013 | 1129 | 2013 |
| PRIDE: a public repository of protein and peptide identifications for the proteomics community P Jones, RG Côté, L Martens, AF Quinn, CF Taylor, W Derache, ... Nucleic acids research 34 (suppl 1), D659-D663, 2006 | 245 | 2006 |
| The proteomics identifications database: 2010 update JA Vizcaíno, R Côté, F Reisinger, H Barsnes, JM Foster, J Rameseder, ... Nucleic acids research 38 (suppl 1), D736-D742, 2010 | 233 | 2010 |
| A guide to the Proteomics Identifications Database proteomics data repository JA Vizcaíno, R Côté, F Reisinger, J M Foster, M Mueller, J Rameseder, ... Proteomics 9 (18), 4276-4283, 2009 | 217 | 2009 |
| The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries R Côté, P Jones, R Apweiler, H Hermjakob Bmc Bioinformatics 7 (1), 97, 2006 | 174 | 2006 |
| PRIDE: new developments and new datasets P Jones, RG Côté, SY Cho, S Klie, L Martens, AF Quinn, D Thorneycroft, ... Nucleic acids research 36 (suppl 1), D878-D883, 2008 | 141 | 2008 |
| The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases R Côté, P Jones, L Martens, S Kerrien, F Reisinger, Q Lin, R Leinonen, ... BMC bioinformatics 8 (1), 401, 2007 | 134 | 2007 |
| PRIDE Inspector: a tool to visualize and validate MS proteomics data R Wang, A Fabregat, D Ríos, D Ovelleiro, JM Foster, RG Côté, J Griss, ... Nature biotechnology 30 (2), 135-137, 2012 | 96 | 2012 |
| The Ontology Lookup Service: more data and better tools for controlled vocabulary queries RG Côté, P Jones, L Martens, R Apweiler, H Hermjakob Nucleic acids research 36 (suppl 2), W372-W376, 2008 | 79 | 2008 |
| The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ... Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012 | 72 | 2012 |
| The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ... Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012 | 72 | 2012 |
| The Ontology Lookup Service: bigger and better R Côté, F Reisinger, L Martens, H Barsnes, JA Vizcaino, H Hermjakob Nucleic acids research 38 (suppl 2), W155-W160, 2010 | 67* | 2010 |
| jmzML, an open‐source Java API for mzML, the PSI standard for MS data RG Côté, F Reisinger, L Martens Proteomics 10 (7), 1332-1335, 2010 | 50 | 2010 |
| Analyzing large-scale proteomics projects with latent semantic indexing S Klie, L Martens, JA Vizcaíno, R Côté, P Jones, R Apweiler, A Hinneburg, ... Journal of proteome research 7 (01), 182-191, 2007 | 41 | 2007 |
| Experience using web services for biological sequence analysis H Stockinger, T Attwood, SN Chohan, R Côté, P Cudré-Mauroux, ... Briefings in bioinformatics 9 (6), 493-505, 2008 | 29 | 2008 |
| Published and perished? The influence of the searched protein database on the long-term storage of proteomics data J Griss, RG Côté, C Gerner, H Hermjakob, JA Vizcaíno Molecular & Cellular Proteomics 10 (9), M111. 008490, 2011 | 24 | 2011 |
| Improvements in the protein identifier cross-reference service SP Wein, RG Côté, M Dumousseau, F Reisinger, H Hermjakob, ... Nucleic acids research 40 (W1), W276-W280, 2012 | 21 | 2012 |
| ISPIDER Central: an integrated database web-server for proteomics JA Siepen, K Belhajjame, JN Selley, SM Embury, NW Paton, CA Goble, ... Nucleic acids research 36 (suppl 2), W485-W490, 2008 | 20 | 2008 |
| The PRIDE proteomics identifications database: data submission, query, and dataset comparison P Jones, R Cˆote Methods Mol Biol 484, 287-303, 2008 | 20 | 2008 |
| Analysis of the experimental detection of central nervous system‐related genes in human brain and cerebrospinal fluid datasets M Mueller, JA Vizcaíno, P Jones, R Côté, D Thorneycroft, R Apweiler, ... Proteomics 8 (6), 1138-1148, 2008 | 19 | 2008 |
