| GenomeScope: fast reference-free genome profiling from short reads GW Vurture, FJ Sedlazeck, M Nattestad, CJ Underwood, H Fang, ... Bioinformatics 33 (14), 2202-2204, 2017 | 1238 | 2017 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1040 | 2018 |
| The pineapple genome and the evolution of CAM photosynthesis R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ... Nature genetics 47 (12), 1435-1442, 2015 | 520 | 2015 |
| Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome S Goodwin, J Gurtowski, S Ethe-Sayers, P Deshpande, MC Schatz, ... Genome research 25 (11), 1750-1756, 2015 | 482 | 2015 |
| Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ... Genome biology 15, 1-16, 2014 | 325 | 2014 |
| Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ... Genome biology 15, 1-16, 2014 | 325 | 2014 |
| Third-generation sequencing and the future of genomics H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ... BioRxiv, 048603, 2016 | 171 | 2016 |
| Third-generation sequencing and the future of genomics H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ... BioRxiv, 048603, 2016 | 171 | 2016 |
| Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ... Genome research 28 (8), 1126-1135, 2018 | 163 | 2018 |
| Error correction and assembly complexity of single molecule sequencing reads H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz BioRxiv, 006395, 2014 | 121 | 2014 |
| Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano K Wasik, J Gurtowski, X Zhou, OM Ramos, MJ Delás, G Battistoni, ... Proceedings of the National Academy of Sciences 112 (40), 12462-12467, 2015 | 107 | 2015 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 77 | 2016 |
| Hybrid assembly with long and short reads improves discovery of gene family expansions JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ... BMC genomics 18, 1-12, 2017 | 65 | 2017 |
| Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae PJ Simner, AAR Antar, S Hao, J Gurtowski, PD Tamma, C Rock, ... Journal of Antimicrobial Chemotherapy 73 (7), 1796-1803, 2018 | 52 | 2018 |
| Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes CF Kent, A Dey, H Patel, N Tsvetkov, T Tiwari, VJ MacPhail, Y Gobeil, ... Frontiers in genetics 9, 316, 2018 | 47 | 2018 |
| Genotyping in the cloud with crossbow J Gurtowski, MC Schatz, B Langmead Current protocols in bioinformatics 39 (1), 15.3. 1-15.3. 15, 2012 | 46 | 2012 |
| Dual functions of Macpiwi1 in transposon silencing and stem cell maintenance in the flatworm Macrostomum lignano X Zhou, G Battistoni, O El Demerdash, J Gurtowski, J Wunderer, ... RNA 21 (11), 1885-1897, 2015 | 29 | 2015 |
| Molecular genetic diversity and characterization of conjugation genes in the fish parasite Ichthyophthirius multifiliis E MacColl, MD Therkelsen, T Sherpa, H Ellerbrock, LA Johnston, ... Molecular phylogenetics and evolution 86, 1-7, 2015 | 18 | 2015 |
| Answering the demands of digital genomics MA Titmus, J Gurtowski, MC Schatz Concurrency and Computation: Practice and Experience 26 (4), 917-928, 2014 | 10 | 2014 |
| Oxford Nanopore sequencing and de novo assembly of a eukaryotic genome S Goodwin, J Gurtowski, S Ethe-Sayers, P Deshpande, M Schatz, ... Genome Res 2015a 25, 1-7, 2016 | 7 | 2016 |
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
