| MUSCLE: multiple sequence alignment with high accuracy and high throughput RC Edgar Nucleic acids research 32 (5), 1792-1797, 2004 | 18476 | 2004 |
| Search and clustering orders of magnitude faster than BLAST RC Edgar Bioinformatics 26 (19), 2460-2461, 2010 | 5042 | 2010 |
| MUSCLE: a multiple sequence alignment method with reduced time and space complexity RC Edgar BMC bioinformatics 5 (1), 113, 2004 | 4176 | 2004 |
| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 3458 | 2011 |
| Structure, function and diversity of the healthy human microbiome Human Microbiome Project Consortium nature 486 (7402), 207, 2012 | 2463 | 2012 |
| UPARSE: highly accurate OTU sequences from microbial amplicon reads RC Edgar Nature methods 10 (10), 996-998, 2013 | 1465 | 2013 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 821 | 2012 |
| The genome sequence of taurine cattle: a window to ruminant biology and evolution CG Elsik, RL Tellam, KC Worley Science 324 (5926), 522-528, 2009 | 769 | 2009 |
| Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86, 2012 | 604 | 2012 |
| Genome sequence, comparative analysis, and population genetics of the domestic horse CM Wade, E Giulotto, S Sigurdsson, M Zoli, S Gnerre, F Imsland, TL Lear, ... Science 326 (5954), 865-867, 2009 | 419 | 2009 |
| Multiple sequence alignment RC Edgar, S Batzoglou Current opinion in structural biology 16 (3), 368-373, 2006 | 353 | 2006 |
| PILER: identification and classification of genomic repeats RC Edgar, EW Myers Bioinformatics 21 (suppl_1), i152-i158, 2005 | 276 | 2005 |
| PILER-CR: fast and accurate identification of CRISPR repeats RC Edgar BMC bioinformatics 8 (1), 18, 2007 | 138 | 2007 |
| A comparison of scoring functions for protein sequence profile alignment RC Edgar, K Sjölander Bioinformatics 20 (8), 1301-1308, 2004 | 125 | 2004 |
| Local homology recognition and distance measures in linear time using compressed amino acid alphabets RC Edgar Nucleic acids research 32 (1), 380-385, 2004 | 109 | 2004 |
| COACH: profile–profile alignment of protein families using hidden Markov models RC Edgar, K Sjölander Bioinformatics 20 (8), 1309-1318, 2004 | 101 | 2004 |
| SATCHMO: sequence alignment and tree construction using hidden Markov models RC Edgar, K Sjölander Bioinformatics 19 (11), 1404-1411, 2003 | 98 | 2003 |
| Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team (2009) Genome sequence, comparative analysis, and population genetics of the domestic horse CM Wade, E Giulotto, S Sigurdsson, M Zoli, S Gnerre, F Imsland, TL Lear, ... Science 326 (5954), 865-867, 0 | 82 | |
| Error filtering, pair assembly and error correction for next-generation sequencing reads RC Edgar, H Flyvbjerg Bioinformatics 31 (21), 3476-3482, 2015 | 69 | 2015 |
| Improved repeat identification and masking in Dipterans CD Smith, RC Edgar, MD Yandell, DR Smith, SE Celniker, EW Myers, ... Gene 389 (1), 1-9, 2007 | 63 | 2007 |