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Shahjahan Ali
Shahjahan Ali
USDA-ARS
Verified email at USDA.gov
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Cited by
Cited by
Year
The genome of the extremophile crucifer Thellungiella parvula
M Dassanayake, DH Oh, JS Haas, A Hernandez, H Hong, S Ali, DJ Yun, ...
Nature genetics 43 (9), 913-918, 2011
3662011
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis
F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ...
Nature genetics 50 (2), 307-316, 2018
3302018
Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis
F Ding, P Cui, Z Wang, S Zhang, S Ali, L Xiong
BMC genomics 15, 1-14, 2014
2422014
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites
YH Woo, H Ansari, TD Otto, CM Klinger, M Kolisko, J Michálek, A Saxena, ...
elife 4, e06974, 2015
2232015
Dissolved organic carbon influences microbial community composition and diversity in managed aquifer recharge systems
D Li, JO Sharp, PE Saikaly, S Ali, M Alidina, MS Alarawi, S Keller, ...
Applied and environmental microbiology 78 (19), 6819-6828, 2012
1372012
Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and …
DH Oh, M Dassanayake, JS Haas, A Kropornika, C Wright, MP d’Urzo, ...
Plant Physiology 154 (3), 1040-1052, 2010
1132010
A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis
T Chen, P Cui, H Chen, S Ali, S Zhang, L Xiong
PLoS Genetics 9 (10), e1003875, 2013
1082013
Isolation of gibberellin metabolic pathway genes from barley and comparative mapping in barley, wheat and rice
W Spielmeyer, M Ellis, M Robertson, S Ali, JR Lenton, PM Chandler
Theoretical and Applied Genetics 109, 847-855, 2004
1082004
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
P Cui, S Zhang, F Ding, S Ali, L Xiong
Genome Biology 15, 1-18, 2014
1022014
Arabidopsis cytochrome P450s through the looking glass: a window on plant biochemistry
MA Schuler, H Duan, M Bilgin, S Ali
Phytochemistry Reviews 5, 205-237, 2006
972006
The structural organisation of the gene encoding class II starch synthase of wheat and barley and the evolution of the genes encoding starch synthases in plants
Z Li, F Sun, S Xu, X Chu, Y Mukai, M Yamamoto, S Ali, L Rampling, ...
Functional & integrative genomics 3, 76-85, 2003
902003
A mechanically-induced colon cancer cell population shows increased metastatic potential
X Tang, TB Kuhlenschmidt, Q Li, S Ali, S Lezmi, H Chen, M Pires-Alves, ...
Molecular cancer 13, 1-15, 2014
852014
Genome-wide transposon mutagenesis indicates that Mycobacterium marinum customizes its virulence mechanisms for survival and replication in different hosts
EM Weerdenburg, AM Abdallah, F Rangkuti, M Abd El Ghany, TD Otto, ...
Infection and immunity 83 (5), 1778-1788, 2015
792015
Viral metagenomics: analysis of begomoviruses by illumina high-throughput sequencing
A Idris, M Al-Saleh, MJ Piatek, I Al-Shahwan, S Ali, JK Brown
Viruses 6 (3), 1219-1236, 2014
642014
Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia
J Janouškovec, R Sobotka, DH Lai, P Flegontov, P Koník, J Komenda, ...
Molecular biology and evolution 30 (11), 2447-2462, 2013
562013
Expression profiles of differentially regulated genes during the early stages of apple flower infection with Erwinia amylovora
S Sarowar, Y Zhao, RE Soria-Guerra, S Ali, D Zheng, D Wang, SS Korban
Journal of experimental botany 62 (14), 4851-4861, 2011
532011
The 3′ non-coding region of a C4 photosynthesis gene increases transgene expression when combined with heterologous promoters
S Ali, WC Taylor
Plant Molecular Biology 46, 325-334, 2001
522001
Untranslated regions from C4 Amaranth AhRbc S1 mRNAs confer translational enhancement and preferential bundle sheath cell expression in transgenic C4 Flaveria bidentis
M Patel, AC Corey, LP Yin, S Ali, WC Taylor, JO Berry
Plant Physiology 136 (3), 3550-3561, 2004
422004
Development and annotation of perennial Triticeae ESTs and SSR markers
BS Bushman, SR Larson, IW Mott, PF Cliften, RRC Wang, NJ Chatterton, ...
Genome 51 (10), 779-788, 2008
402008
Quantitative regulation of the Flaveria Me1 gene is controlled by the 3′-untranslated region and sequences near the amino terminus
S Ali, WC Taylor
Plant Molecular Biology 46, 251-261, 2001
402001
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