| LncRNA-ID: Long non-coding RNA IDentification using balanced random forests R Achawanantakun, J Chen, Y Sun, Y Zhang Bioinformatics 31 (24), 3897-3905, 2015 | 105 | 2015 |
| HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors Y Zhang, Y Sun BMC bioinformatics 12, 1-10, 2011 | 74 | 2011 |
| A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data Y Zhang, Y Sun, JR Cole PLoS computational biology 10 (8), e1003737, 2014 | 36 | 2014 |
| A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads Y Zhang, Y Sun, JR Cole Bioinformatics 29 (17), 2103-2111, 2013 | 14 | 2013 |
| MetaDomain: a profile HMM-based protein domain classification tool for short sequences Y Zhang, Y Sun Biocomputing 2012, 271-282, 2012 | 14 | 2012 |
| Perceptual relevance measure for generic shape coding Z Lai, W Liu, Y Zhang 2009 Data Compression Conference, 453-453, 2009 | 5 | 2009 |
| PseudoDomain: identification of processed pseudogenes based on protein domain classification Y Zhang, Y Sun Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 3 | 2012 |
| An Improved Genetic Algorithm for Multiple Sequence Alignment Project Report of CSE848, Fall 2010 Y Zhang, R Achawanantakun | | 2010 |
| Netflix Challenge: A Study in Recommender Systems W Qiao, Y Zhang, R Achawanantakun | | 2009 |
| Determine ncRNA structure shape using context-free grammar and support vector machine R Achawanantakun, Y Zhang | | |
| Profile HMM-based Protein Domain Classification for Metagenomic Sequences Y Zhang, Y Sun | | |
| DNA Sequence Classification in the Presence of Sequencing Errors Project of CSE847 Y Zhang, C Yuan | | |
