| Large-scale genome-wide association study of coronary artery disease in genetically diverse populations C Tcheandjieu, X Zhu, AT Hilliard, SL Clarke, V Napolioni, S Ma, KM Lee, ... Nature medicine 28 (8), 1679-1692, 2022 | 122 | 2022 |
| Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage X Zhang, D Hong, S Ma, T Ward, M Ho, R Pattni, Z Duren, A Stankov, ... Proceedings of the National Academy of Sciences 117 (9), 4864-4873, 2020 | 69 | 2020 |
| Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data S Ma, T Jiang, R Jiang Bioinformatics 31 (4), 563-571, 2014 | 22 | 2014 |
| Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression Z Lin, M Zamanighomi, T Daley, S Ma, WH Wong | 19 | 2020 |
| Construction and analysis of functional networks in the gut microbiome of type 2 diabetes patients L Li, Z Wang, P He, S Ma, J Du, R Jiang Genomics, proteomics & bioinformatics 14 (5), 314-324, 2016 | 19 | 2016 |
| Accurate inference of isoforms from multiple sample RNA-Seq data M Tasnim, S Ma, EW Yang, T Jiang, W Li BMC genomics 16 (2), 1-12, 2015 | 17 | 2015 |
| Network effects of the 15q13. 3 microdeletion on the transcriptome and epigenome in human-induced neurons S Zhang, X Zhang, C Purmann, S Ma, A Shrestha, KN Davis, M Ho, ... Biological Psychiatry 89 (5), 497-509, 2021 | 16 | 2021 |
| A large-scale multi-ethnic genome-wide association study of coronary artery disease T Assimes, C Tcheandjieu, X Zhu, A Hilliard, S Clarke, V Napolioni, S Ma, ... | 12 | 2021 |
| Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks M Wu, Z Lin, S Ma, T Chen, R Jiang, WH Wong Journal of molecular cell biology 9 (6), 436-452, 2017 | 12 | 2017 |
| Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm S Ma, X Chen, X Zhu, PS Tsao, WH Wong Proceedings of the National Academy of Sciences 119 (1), e2115601119, 2022 | 8 | 2022 |
| Constructing tissue-specific transcriptional regulatory networks via a Markov random field S Ma, T Jiang, R Jiang BMC genomics 19 (10), 65-77, 2018 | 7 | 2018 |
| Attenuated IL-2 muteins leverage the TCR signal to enhance regulatory T cell homeostasis and response in vivo S Ma, M So, A Ghelani, R Srivas, A Sahoo, R Hall, W Liu, H Wu, S Yu, ... Frontiers in Immunology 14, 1257652, 2023 | 3 | 2023 |
| Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment KN Davis, PP Qu, S Ma, L Lin, M Plastini, N Dahl, G Plazzi, F Pizza, ... Human Molecular Genetics 32 (21), 3105-3120, 2023 | 2 | 2023 |
| NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks Z Wei, K Hua, L Wei, S Ma, R Jiang, X Zhang, Y Li, WH Wong, X Wang Proceedings of the National Academy of Sciences 120 (15), e2216698120, 2023 | 2 | 2023 |
| FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome J Zhou, S Ma, D Wang, J Zeng, T Jiang Nucleic acids research 46 (2), e11-e11, 2018 | 2 | 2018 |
| Genetic effects of sequence-conserved enhancer-like elements on human complex traits X Zhu, S Ma, WH Wong Genome Biology 25 (1), 1, 2024 | 1 | 2024 |
| NeuronMotif: Deciphering transcriptional cis-regulatory codes from deep neural networks Z Wei, K Hua, L Wei, S Ma, R Jiang, Y Li, WH Wong, X Wang bioRxiv, 2021.02. 10.430606, 2021 | 1 | 2021 |
| Performance of Polygenic Risk Scores for Coronary Artery Disease in the Million Veteran Program C Tcheandjieu, X Zhu, S Ma, A Hilliard, SL Clarke, JA Lynch, ... Circulation 139 (Suppl_1), A012-A012, 2019 | 1 | 2019 |
| Direct induction of human neurons from fibroblasts carrying the neuropsychiatric 22q11. 2 microdeletion reveals transcriptome-and epigenome-wide alterations C Purmann, CE Ang, K Tanabe, Y Zhang, S Kundu, T Danko, S Ma, ... bioRxiv, 2021.10. 14.464344, 2021 | | 2021 |
| 81 INTEGRATED ANALYSIS OF GENE EXPRESSION, DNA METHYLATION AND CHROMATIN ACCESSIBILITY IN A HUMAN IPSC-TO-INDUCED-NEURON MODEL OF THE 15Q13. 3 MICRODELETION S Zhang, X Zhang, S Ma, C Purmann, K Davis, WH Wong, J Bernstein, ... European Neuropsychopharmacology 29, S105, 2019 | | 2019 |
