| TGS-GapCloser: a fast and accurate gap closer for large genomes with low coverage of error-prone long reads M Xu, L Guo, S Gu, O Wang, R Zhang, BA Peters, G Fan, X Liu, X Xu, ... GigaScience 9 (9), giaa094, 2020 | 170 | 2020 |
| SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme L Guo, M Xu, W Wang, S Gu, X Zhao, F Chen, O Wang, X Xu, I Seim, ... BMC bioinformatics 22, 1-16, 2021 | 19 | 2021 |
| The complete and fully-phased diploid genome of a male Han Chinese C Yang, Y Zhou, Y Song, D Wu, Y Zeng, L Nie, P Liu, S Zhang, G Chen, ... Cell Research 33 (10), 745-761, 2023 | 18 | 2023 |
| An enormous Paris polyphylla genome sheds light on genome size evolution and polyphyllin biogenesis J Li, M Lv, L Du, A Yunga, S Hao, Y Zhang, X Zhang, L Guo, X Gao, ... BioRxiv, 2020.06. 01.126920, 2020 | 9 | 2020 |
| VT3D: a visualization toolbox for 3D transcriptomic data L Guo, Y Li, Y Qi, Z Huang, K Han, X Liu, X Liu, M Xu, G Fan Journal of Genetics and Genomics 50 (9), 713-719, 2023 | 4 | 2023 |
| Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios M Xu, L Guo, X Du, L Li, BA Peters, L Deng, O Wang, F Chen, J Wang, ... Bioinformatics 37 (15), 2095-2102, 2021 | 4 | 2021 |
| Symbiont-screener: a reference-free tool to separate host sequences from symbionts for error-prone long reads M Xu, L Guo, Y Qi, C Shi, X Liu, J Chen, J Han, L Deng, X Liu, G Fan Frontiers in Marine Science 10, 133, 2023 | 3 | 2023 |
| Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics S Fang, M Xu, L Cao, X Liu, M Bezulj, L Tan, Z Yuan, Y Li, T Xia, L Guo, ... bioRxiv, 2023.12. 04.569485, 2023 | 3 | 2023 |
| MetaTrass: A high‐quality metagenome assembler of the human gut microbiome by cobarcoding sequencing reads Y Qi, S Gu, Y Zhang, L Guo, M Xu, X Cheng, O Wang, Y Sun, J Chen, ... iMeta 1 (4), e46, 2022 | 2 | 2022 |
| Designing efficient randstrobes for sequence similarity analyses M Karami, A Soltani Mohammadi, M Martin, B Ekim, W Shen, L Guo, M Xu, ... Bioinformatics 40 (4), btae187, 2024 | | 2024 |
| Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity and Outcome in Urothelial Bladder Carcinoma W Lv, X Pan, P Han, S Wu, Y Zeng, Q Wang, L Guo, M Xu, F Wang, Z Xu, ... | | 2023 |
| SpaGRN: investigating spatially informed regulatory paths for spatially resolved transcriptomics data Y Li, X Liu, L Guo, K Han, S Fang, X Wan, X Xu, G Fan, M Xu bioRxiv, 2023.11. 19.567673, 2023 | | 2023 |
| Symbiont-Screener: a reference-free filter to automatically separate host sequences and contaminants for long reads or co-barcoded reads by unsupervised clustering M Xu, L Guo, C Shi, X Liu, J Chen, X Liu, G Fan bioRxiv, 2020.10. 26.354621, 2020 | | 2020 |
| Extrachromosomal Circular DNA Orchestrates Genome Heterogeneity In Urothelial Bladder Carcinoma W Lv, X Pan, P Han, S Wu, Y Zeng, Q Wang, L Guo, M Xu, F Wang, Y Qi, ... | | |
