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Baraa Orabi
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Year
Alignment-free clustering of UMI tagged DNA molecules
B Orabi, E Erhan, B McConeghy, SV Volik, S Le Bihan, R Bell, CC Collins, ...
Bioinformatics 35 (11), 1829-1836, 2019
252019
Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA
AR Gawroński, YY Lin, B McConeghy, S LeBihan, H Asghari, C Koçkan, ...
Nucleic acids research 47 (7), e38-e38, 2019
172019
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments
G Ebrahimi, B Orabi, M Robinson, C Chauve, R Flannigan, F Hach
Iscience 25 (7), 2022
6*2022
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
B Orabi, N Xie, B McConeghy, X Dong, C Chauve, F Hach
Nucleic Acids Research 51 (2), e11-e11, 2023
32023
TKSM: Highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator
F Karaoğlanoğlu, B Orabi, R Flannigan, C Chauve, F Hach
Bioinformatics 40 (2), btae051, 2024
2024
Alignment-free clustering and error correction of UMI tagged DNA molecules
B Orabi
Simon Fraser University, 2018
2018
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Articles 1–6