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Alexander Predeus
Alexander Predeus
Principal bioinformatician at Wellcome Sanger Institute
Verified email at sanger.ac.uk - Homepage
Title
Cited by
Cited by
Year
Caloric restriction in humans reveals immunometabolic regulators of health span
O Spadaro, Y Youm, I Shchukina, S Ryu, S Sidorov, A Ravussin, ...
Science 375 (6581), 671-677, 2022
1342022
Systematic dissection of biases in whole-exome and whole-genome sequencing reveals major determinants of coding sequence coverage
YA Barbitoff, DE Polev, AS Glotov, EA Serebryakova, IV Shcherbakova, ...
Scientific Reports 10 (1), 2057, 2020
1092020
Diels−Alder Reaction−Aromatization Approach toward Functionalized Ring C Allocolchicinoids. Enantioselective Total Synthesis of (−)-7S-Allocolchicine
AV Vorogushin, AV Predeus, WD Wulff, HJ Hansen
The Journal of Organic Chemistry 68 (15), 5826-5831, 2003
1052003
PRIMO: a transferable coarse-grained force field for proteins
P Kar, SM Gopal, YM Cheng, A Predeus, M Feig
Journal of chemical theory and computation 9 (8), 3769-3788, 2013
982013
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa
CV Pulford, BM Perez-Sepulveda, R Canals, JA Bevington, RJ Bengtsson, ...
Nature microbiology 6 (3), 327-338, 2021
792021
Regulation of orthogonal functions in a dual catalyst system. Subservient role of a nonchiral Lewis acid in an asymmetric catalytic heteroatom Diels− Alder reaction
CA Newman, JC Antilla, P Chen, AV Predeus, L Fielding, WD Wulff
Journal of the American Chemical Society 129 (23), 7216-7217, 2007
732007
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580
R Canals, DL Hammarlöf, C Kröger, SV Owen, WY Fong, ...
PLoS biology 17 (1), e3000059, 2019
652019
Unifying model for molecular determinants of the preselection Vβ repertoire
S Gopalakrishnan, K Majumder, A Predeus, Y Huang, OI Koues, ...
Proceedings of the National Academy of Sciences 110 (34), E3206-E3215, 2013
582013
Conformational sampling of peptides in the presence of protein crowders from AA/CG-multiscale simulations
AV Predeus, S Gul, SM Gopal, M Feig
The Journal of Physical Chemistry B 116 (29), 8610-8620, 2012
572012
DNA bending propensity in the presence of base mismatches: implications for DNA repair
M Sharma, AV Predeus, S Mukherjee, M Feig
The Journal of Physical Chemistry B 117 (20), 6194-6205, 2013
552013
Effect of gene-lifestyle interaction on gestational diabetes risk
PV Popova, AA Klyushina, LB Vasilyeva, AS Tkachuk, YA Bolotko, ...
Oncotarget 8 (67), 112024, 2017
462017
Optically active calixarenes conduced by methylene substitution
V Gopalsamuthiram, AV Predeus, RH Huang, WD Wulff
Journal of the American Chemical Society 131 (50), 18018-18019, 2009
462009
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
BM Perez-Sepulveda, D Heavens, CV Pulford, AV Predeus, R Low, ...
Genome biology 22, 1-18, 2021
392021
Energetic and structural details of the trigger-loop closing transition in RNA polymerase II
B Wang, AV Predeus, ZF Burton, M Feig
Biophysical journal 105 (3), 767-775, 2013
392013
Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery
YA Barbitoff, R Abasov, VE Tvorogova, AS Glotov, AV Predeus
BMC genomics 23 (1), 1-17, 2022
362022
Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica
TSR Powers, AL Haeberle, AV Predeus, DL Hammarlöf, JA Cundiff, ...
PLoS pathogens 17 (8), e1009280, 2021
332021
Identification of novel candidate markers of type 2 diabetes and obesity in Russia by exome sequencing with a limited sample size
YA Barbitoff, EA Serebryakova, YA Nasykhova, AV Predeus, DE Polev, ...
Genes 9 (8), 415, 2018
332018
Catching hidden variation: systematic correction of reference minor allele annotation in clinical variant calling
YA Barbitoff, IV Bezdvornykh, DE Polev, EA Serebryakova, AS Glotov, ...
Genetics in Medicine 20 (3), 360-364, 2018
332018
Whole‑exome sequencing in Russian children with non‑type 1 diabetes mellitus reveals a wide spectrum of genetic variants in MODY‑related and unrelated genes
OS Glotov, EA Serebryakova, ME Turkunova, OA Efimova, AS Glotov, ...
Molecular Medicine Reports, 2019
322019
Whole‐exome sequencing provides insights into monogenic disease prevalence in Northwest Russia
YA Barbitoff, RK Skitchenko, OI Poleshchuk, AE Shikov, EA Serebryakova, ...
Molecular genetics & genomic medicine 7 (11), e964, 2019
312019
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