| AACR Project GENIE: powering precision medicine through an international consortium AACR Project Genie Consortium Cancer discovery 7 (8), 818-831, 2017 | 1239 | 2017 |
| An integrated genomic and transcriptomic survey of mucormycosis-causing fungi MC Chibucos, S Soliman, T Gebremariam, H Lee, S Daugherty, J Orvis, ... Nature communications 7 (1), 1-11, 2016 | 129 | 2016 |
| A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells Y Mei, Y Wang, P Kumari, AC Shetty, D Clark, T Gable, AD MacKerell, ... Nature communications 6, 7316, 2015 | 106 | 2015 |
| New signaling pathways govern the host response to C. albicans infection in various niches Y Liu, AC Shetty, JA Schwartz, LL Bradford, W Xu, QT Phan, P Kumari, ... Genome research 25 (5), 679-689, 2015 | 88 | 2015 |
| Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions JC Silva, E Cornillot, C McCracken, S Usmani-Brown, A Dwivedi, ... Scientific reports 6, 35284, 2016 | 75 | 2016 |
| Drosophila anti-nematode and antibacterial immune regulators revealed by RNA-Seq JC Castillo, T Creasy, P Kumari, A Shetty, U Shokal, LJ Tallon, ... BMC genomics 16 (1), 519, 2015 | 74 | 2015 |
| OncoTree: A Cancer Classification System for Precision Oncology R Kundra, H Zhang, R Sheridan, SJ Sirintrapun, A Wang, A Ochoa, ... JCO Clinical Cancer Informatics 5, 221-230, 2021 | 69 | 2021 |
| Analysis and visualization of longitudinal genomic and clinical data from the AACR project GENIE biopharma collaborative in cBioPortal I de Bruijn, R Kundra, B Mastrogiacomo, TN Tran, L Sikina, T Mazor, X Li, ... Cancer research 83 (23), 3861-3867, 2023 | 67 | 2023 |
| AACR Project GENIE: 100,000 cases and beyond TJ Pugh, JL Bell, JP Bruce, GJ Doherty, M Galvin, MF Green, ... Cancer Discovery, OF1-OF14, 2022 | 39 | 2022 |
| Genomic characterization of de novo metastatic breast cancer AC Garrido-Castro, LF Spurr, ME Hughes, YY Li, AD Cherniack, P Kumari, ... Clinical Cancer Research, 2020 | 27 | 2020 |
| The cBioPortal for cancer genomics and its application in precision oncology J Gao, J Lindsay, S Watt, I Bahceci, P Lukasse, A Abeshouse, HW Chen, ... Cancer Research 76 (14 Supplement), 5277-5277, 2016 | 21 | 2016 |
| Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms K Tretina, R Pelle, J Orvis, HT Gotia, OO Ifeonu, P Kumari, NC Palmateer, ... BMC genomics 21, 1-12, 2020 | 20 | 2020 |
| MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteria J Lindsay, CDV Fitz, Z Zwiesler, P Kumari, B Van Der Veen, T Monrose, ... bioRxiv, 199489, 2017 | 19 | 2017 |
| MatchMiner: an open-source platform for cancer precision medicine H Klein, T Mazor, E Siegel, P Trukhanov, A Ovalle, CD Vecchio Fitz, ... NPJ Precision Oncology 6 (1), 69, 2022 | 14 | 2022 |
| Identifying ERBB2 Activating Mutations in HER2-Negative Breast Cancer: Clinical Impact of Institute-Wide Genomic Testing and Enrollment in Matched Therapy Trials P Exman, AC Garrido-Castro, ME Hughes, RA Freedman, T Li, L Trippa, ... JCO Precision Oncology 1, 1-9, 2019 | 9 | 2019 |
| The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data J Gao, T Mazor, E Ciftci, P Raman, P Lukasse, I Bahceci, A Sigaras, ... Cancer Research 78 (13 Supplement), 923-923, 2018 | 8 | 2018 |
| A phosphorylation-wide sncRNA screen reveals Protein Functional Effector sncRNAs (pfeRNAs) in human lung somatic cells T Gable, Y Wang, D Clark, P Kumari, AC Shetty, M Li, Y Mei Cancer letters 396, 85-93, 2017 | 6 | 2017 |
| Genomic landscape of de novo stage IV breast cancer. AC Garrido-Castro, L Spurr, ME Hughes, YY Li, AD Cherniack, ... Journal of Clinical Oncology 37 (15_suppl), 1022-1022, 2019 | 4 | 2019 |
| The Metastatic Breast Cancer Project: Partnering with patients to accelerate progress in cancer research N Wagle, C Painter, E Anastasio, M Dunphy, M McGillicuddy, R Stoddard, ... Cancer Research 78 (13 Supplement), 5371-5371, 2018 | 3 | 2018 |
| The Metastatic Breast Cancer Project: leveraging patient-partnered research to expand the clinical and genomic landscape of metastatic breast cancer and accelerate discoveries E Jain, JGT Zanudo, M McGillicuddy, DL Abravanel, BS Thomas, D Kim, ... medRxiv, 2023.06. 07.23291117, 2023 | 2 | 2023 |
