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Vincent Mallet
Vincent Mallet
CNRS, LIX
Adresse e-mail validée de mail.mcgill.ca - Page d'accueil
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OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery
J Boitreaud, V Mallet, C Oliver, J Waldispuhl
Journal of Chemical Information and Modeling 60 (12), 5658-5666, 2020
572020
Augmented base pairing networks encode RNA-small molecule binding preferences
C Oliver, V Mallet, RS Gendron, V Reinharz, WL Hamilton, N Moitessier, ...
Nucleic Acids Research, 2020
342020
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions
V Mallet, L Checa Ruano, A Moine Franel, M Nilges, K Druart, G Bouvier, ...
Bioinformatics 38 (5), 1261-1268, 2022
182022
Vernal: a tool for mining fuzzy network motifs in RNA
C Oliver, V Mallet, P Philippopoulos, WL Hamilton, J Waldispühl
Bioinformatics 38 (4), 970-976, 2022
152022
quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories
V Mallet, M Nilges, G Bouvier
Bioinformatics 37 (14), 2064-2065, 2021
142021
Reverse-complement equivariant networks for DNA sequences
V Mallet, JP Vert
Advances in neural information processing systems 34, 13511-13523, 2021
122021
RNAglib: a python package for RNA 2.5 D graphs
V Mallet, C Oliver, J Broadbent, WL Hamilton, J Waldispühl
Bioinformatics 38 (5), 1458-1459, 2022
82022
Leveraging binding-site structure for drug discovery with point-cloud methods
V Mallet
McGill University (Canada), 2019
72019
Approximate network motif mining via graph learning
C Oliver, D Chen, V Mallet, P Philippopoulos, K Borgwardt
arXiv preprint arXiv:2206.01008, 2022
42022
3D-based RNA function prediction tools in rnaglib
C Oliver, V Mallet, J Waldispühl
arXiv preprint arXiv:2402.09330, 2024
2024
AlignScape, displaying sequence similarity using self-organizing maps
I Filella-Merce, V MALLET, E Durand, M Nilges, G Bouvier, R Pellarin
Frontiers in Bioinformatics 4, 1321508, 2024
2024
AtomSurf: Surface Representation for Learning on Protein Structures
V Mallet, S Attaiki, M Ovsjanikov
arXiv preprint arXiv:2309.16519, 2023
2023
Semi-supervised learning and large-scale docking data accelerate RNA virtual screening
JG Carvajal-Patino, V Mallet, D Becerra, LF Nino, C Oliver, J Waldispuhl
bioRxiv, 2023.11. 23.568394, 2023
2023
Finding Antibodies in Cryo-EM densities with CrAI
V Mallet, C Rapisarda, H Minoux, M Ovsjanikov
bioRxiv, 2023.09. 27.559736, 2023
2023
Geometric deep learning for structural bioinformatics
V Mallet
Université Paris Cité, 2022
2022
Edge-similarity-aware Graph Neural Networks
V Mallet, CG Oliver, WL Hamilton
arXiv preprint arXiv:2109.09432, 2021
2021
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