Volgen
Aalt D.J. van Dijk
Aalt D.J. van Dijk
Professor Data Analysis in the Life Sciences, University of Amsterdam
Geverifieerd e-mailadres voor uva.nl - Homepage
Titel
Geciteerd door
Geciteerd door
Jaar
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
10342013
HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets
SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ...
Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007
6742007
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
4072016
Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis
Y Zhang, ADJ Van Dijk, A Scaffidi, GR Flematti, M Hofmann, ...
Nature chemical biology 10 (12), 1028-1033, 2014
3762014
Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically
S Danisman, F Van der Wal, S Dhondt, R Waites, S de Folter, A Bimbo, ...
Plant physiology 159 (4), 1511-1523, 2012
3082012
SEPALLATA3: the'glue'for MADS box transcription factor complex formation
RGH Immink, IAN Tonaco, S de Folter, A Shchennikova, ADJ van Dijk, ...
Genome biology 10, 1-16, 2009
3082009
Characterization of SOC1’s central role in flowering by the identification of its upstream and downstream regulators
RGH Immink, D Posé, S Ferrario, F Ott, K Kaufmann, FL Valentim, ...
Plant physiology 160 (1), 433-449, 2012
2202012
Data‐driven docking for the study of biomolecular complexes
ADJ Van Dijk, R Boelens, AMJJ Bonvin
The FEBS journal 272 (2), 293-312, 2005
2112005
Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility
M van Dijk, ADJ van Dijk, V Hsu, R Boelens, AMJJ Bonvin
Nucleic acids research 34 (11), 3317-3325, 2006
2072006
WHISCY: what information does surface conservation yield? Application to data‐driven docking
SJ de Vries, ADJ van Dijk, AMJJ Bonvin
Proteins: Structure, Function, and Bioinformatics 63 (3), 479-489, 2006
1782006
Solvated docking: introducing water into the modelling of biomolecular complexes
ADJ Van Dijk, AMJJ Bonvin
Bioinformatics 22 (19), 2340-2347, 2006
1762006
Towards recommendations for metadata and data handling in plant phenotyping
P Krajewski, D Chen, H Ćwiek, ADJ van Dijk, F Fiorani, P Kersey, ...
Journal of Experimental Botany 66 (18), 5417-5427, 2015
1392015
Valencene synthase from the heartwood of Nootka cypress (Callitropsis nootkatensis) for biotechnological production of valencene
J Beekwilder, A van Houwelingen, K Cankar, ADJ van Dijk, RM de Jong, ...
Plant biotechnology journal 12 (2), 174-182, 2014
1332014
Analysis of functional redundancies within the Arabidopsis TCP transcription factor family
S Danisman, ADJ van Dijk, A Bimbo, F van der Wal, L Hennig, S de Folter, ...
Journal of experimental botany 64 (18), 5673-5685, 2013
1322013
Machine learning in plant science and plant breeding
ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder
Iscience 24 (1), 2021
1312021
Bayesian Markov Random Field analysis for protein function prediction based on network data
YAI Kourmpetis, ADJ Van Dijk, MCAM Bink, RCHJ van Ham, ...
PloS one 5 (2), e9293, 2010
1192010
Data‐driven docking: HADDOCK's adventures in CAPRI
ADJ Van Dijk, SJ De Vries, C Dominguez, H Chen, HX Zhou, A Bonvin
Proteins: Structure, Function, and Bioinformatics 60 (2), 232-238, 2005
1112005
The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history
A Pajoro, S Biewers, E Dougali, F Leal Valentim, MA Mendes, A Porri, ...
Journal of Experimental Botany 65 (17), 4731-4745, 2014
1082014
Various strategies of using residual dipolar couplings in NMR‐driven protein docking: Application to Lys48‐linked di‐ubiquitin and validation against 15N …
ADJ van Dijk, D Fushman, AMJJ Bonvin
Proteins: Structure, Function, and Bioinformatics 60 (3), 367-381, 2005
1012005
Cross-family transcription factor interactions: an additional layer of gene regulation
M Bemer, ADJ van Dijk, RGH Immink, GC Angenent
Trends in plant science 22 (1), 66-80, 2017
912017
Het systeem kan de bewerking nu niet uitvoeren. Probeer het later opnieuw.
Artikelen 1–20