| The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations S Avraham, CW Tung, K Ilic, P Jaiswal, EA Kellogg, S McCouch, A Pujar, ... Nucleic acids research 36 (suppl_1), D449-D454, 2008 | 146 | 2008 |
| Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages P Jaiswal, S Avraham, K Ilic, EA Kellogg, S McCouch, A Pujar, L Reiser, ... Comparative and functional genomics 6 (7‐8), 388-397, 2005 | 135 | 2005 |
| The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant K Ilic, EA Kellogg, P Jaiswal, F Zapata, PF Stevens, LP Vincent, ... Plant physiology 143 (2), 587-599, 2007 | 103 | 2007 |
| Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda F Zapata, NG Wilson, M Howison, SCS Andrade, KM Jörger, M Schrödl, ... Proc. R. Soc. B 281 (1794), 20141739, 2014 | 60 | 2014 |
| Whole-plant growth stage ontology for angiosperms and its application in plant biology A Pujar, P Jaiswal, EA Kellogg, K Ilic, L Vincent, S Avraham, P Stevens, ... Plant physiology 142 (2), 414-428, 2006 | 48 | 2006 |
| Agalma: an automated phylogenomics workflow CW Dunn, M Howison, F Zapata BMC bioinformatics 14 (1), 330, 2013 | 42 | 2013 |
| Species Delimitation: Inferring Gaps in Morphology across Geography F Zapata, I Jiménez Systematic Biology 61 (2), 179-194, 2012 | 41 | 2012 |
| Phylogenomic analyses support traditional relationships within Cnidaria F Zapata, FE Goetz, SA Smith, M Howison, S Siebert, SH Church, ... PLoS One 10 (10), e0139068, 2015 | 39 | 2015 |
| Investigating processes of neotropical rain forest tree diversification by examining the evolution and historical biogeography of the Protieae (Burseraceae) PVA Fine, F Zapata, DC Daly Evolution 68 (7), 1988-2004, 2014 | 34 | 2014 |
| The importance of environmental heterogeneity and spatial distance in generating phylogeographic structure in edaphic specialist and generalist tree species of Protium (Burseraceae) across the Amazon Basin PVA Fine, F Zapata, DC Daly, I Mesones, TM Misiewicz, HF Cooper, ... Journal of Biogeography, 0 | 26 | |
| Toward a statistically explicit understanding of de novo sequence assembly M Howison, F Zapata, CW Dunn Bioinformatics 29 (23), 2959-2963, 2013 | 20 | 2013 |
| To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in “Terebinthaceae”(Anacardiaceae and Burseraceae) A Weeks, F Zapata, SK Pell, DC Daly, JD Mitchell, PVA Fine Frontiers in genetics 5, 2014 | 17 | 2014 |
| A multilocus phylogenetic analysis of Escallonia (Escalloniaceae): diversification in montane South America F Zapata American journal of botany 100 (3), 526-545, 2013 | 9 | 2013 |
| Phylogenetics of Escallonia (Escalloniaceae) based on plastid DNA sequence data SM Sede, SI Dürnhöfer, S Morello, F Zapata Botanical Journal of the Linnean Society 173 (3), 442-451, 2013 | 8 | 2013 |
| Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones CWD Stefan Siebert, Freya E Goetz, Samuel H Church, Pathikrit Bhattacharyya ... EvoDevo 6 (1), 1-18, 2015 | 6* | 2015 |
| Bayesian genome assembly and assessment by Markov chain Monte Carlo sampling M Howison, F Zapata, EJ Edwards, CW Dunn PloS one 9 (6), e99497, 2014 | 6 | 2014 |
| Diversification of the monoterpene synthase gene family (TPSb) in Protium, a highly diverse genus of tropical trees F Zapata, PVA Fine Molecular phylogenetics and evolution 68 (3), 432-442, 2013 | 6 | 2013 |
| Phylogenetics and diversification of Escallonia (Escalloniaceae) F Zapata University of Missouri-Saint Louis, 2010 | 4 | 2010 |
| Schr odl M, Goetz FE, Giribet G, Dunn CW. 2014. Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda F Zapata, NG Wilson, M Howison, SCS Andrade, KM Jorger Proceedings of the Royal Society B: Biological Sciences 281, 20141739, 0 | 4 | |
| An integrated perspective on phylogenetic workflows A Guang, F Zapata, M Howison, CE Lawrence, CW Dunn Trends in ecology & evolution 31 (2), 116-126, 2016 | 3 | 2016 |