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John M. Burke
John M. Burke
Distinguished Research Professor & Head, Plant Biology, University of Georgia
Verified email at uga.edu - Homepage
Title
Cited by
Cited by
Year
EST-SSRs as a resource for population genetic analyses
JR Ellis, JM Burke
Heredity 99 (2), 125-132, 2007
7092007
Genetics and the fitness of hybrids
JM Burke, ML Arnold
Annual Review of Genetics 35 (1), 31-52, 2001
7002001
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
Nature 546 (7656), 148-152, 2017
6632017
Agriculture: feeding the future
S McCouch, GJ Baute, J Bradeen, P Bramel, PK Bretting, E Buckler, ...
Nature 499 (7456), 23, 2013
5742013
Widespread natural variation of DNA methylation within angiosperms
CE Niederhuth, AJ Bewick, L Ji, MS Alabady, K Do Kim, Q Li, NA Rohr, ...
Genome Biology 17 (1), 194, 2016
4732016
Genetic analysis of sunflower domestication
JM Burke, S Tang, SJ Knapp, LH Rieseberg
Genetics 161 (3), 1257-1267, 2002
3582002
The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations
LH Rieseberg, A Widmer, AM Arntz, B Burke
Philosophical Transactions of the Royal Society of London B: Biological …, 2003
3472003
Genomic islands of divergence are not affected by geography of speciation in sunflowers
S Renaut, CJ Grassa, S Yeaman, BT Moyers, Z Lai, NC Kane, JE Bowers, ...
Nature Communications 4, 1827, 2013
3192013
Massive haplotypes underlie ecotypic differentiation in sunflowers
M Todesco, GL Owens, N Bercovich, JS Légaré, S Soudi, DO Burge, ...
Nature 584 (7822), 602-607, 2020
3032020
Natural hybridization: how low can you go and still be important?
ML Arnold, MR Bulger, JM Burke, AL Hempel, JH Williams
Ecology 80 (2), 371-381, 1999
2791999
EST databases as a source for molecular markers: Lessons from Helianthus
CH Pashley, JR Ellis, DE McCauley, JM Burke
Journal of Heredity 97 (4), 381-388, 2006
2582006
Directional selection is the primary cause of phenotypic diversification
LH Rieseberg, A Widmer, AM Arntz, JM Burke
Proceedings of the National Academy of Sciences 99 (19), 12242-12245, 2002
2582002
Parallel genotypic adaptation: when evolution repeats itself
TE Wood, JM Burke, LH Rieseberg
Genetica 123 (1-2), 157-170, 2005
2532005
Patterns of nucleotide diversity in wild and cultivated sunflower
A Liu, JM Burke
Genetics 173 (1), 321-330, 2006
2392006
Letting the gene out of the bottle: the population genetics of genetically modified crops
MA Chapman, JM Burke
New Phytologist 170 (3), 429-443, 2006
2272006
The biological reality of species: gene flow, selection, and collective evolution
LH Rieseberg, JM Burke
Taxon 50 (1), 47-67, 2001
2212001
Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance
S Hübner, N Bercovich, M Todesco, JR Mandel, J Odenheimer, E Ziegler, ...
Nature plants 5 (1), 54-62, 2019
2142019
Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species
Z Lai, T Nakazato, M Salmaso, JM Burke, S Tang, SJ Knapp, ...
Genetics 171 (1), 291-303, 2005
2132005
Fitness effects of transgenic disease resistance in sunflowers
JM Burke, LH Rieseberg
Science 300 (5623), 1250-1250, 2003
2092003
Genetic diversity and population structure in cultivated sunflower and a comparison to its wild progenitor, Helianthus annuus L
JR Mandel, JM Dechaine, LF Marek, JM Burke
Theoretical and applied genetics 123 (5), 693-704, 2011
2002011
Genetic divergence and hybrid speciation
MA Chapman, JM Burke
Evolution 61 (7), 1773-1780, 2007
1982007
Molecular insights into the evolution of crop plants
JC Burger, MA Chapman, JM Burke
American Journal of Botany 95 (2), 113-122, 2008
1892008
A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae
JR Mandel, RB Dikow, VA Funk, RR Masalia, SE Staton, A Kozik, ...
Applications in Plant Sciences 2 (2), 2014
1872014
Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family
MA Chapman, JH Leebens-Mack, JM Burke
Molecular biology and evolution 25 (7), 1260-1273, 2008
1432008
Association mapping and the genomic consequences of selection in sunflower
JR Mandel, S Nambeesan, JE Bowers, LF Marek, D Ebert, LH Rieseberg, ...
PLoS Genet 9 (3), e1003378, 2013
1422013
Widespread gene conversion in centromere cores
J Shi, SE Wolf, JM Burke, GG Presting, J Ross-Ibarra, RK Dawe
PLoS Biol 8 (3), e1000327, 2010
1392010
SNP discovery and development of a high-density genotyping array for sunflower
E Bachlava, CA Taylor, S Tang, JE Bowers, JR Mandel, JM Burke, ...
PLoS One 7 (1), e29814, 2012
1382012
Genetic analysis of floral symmetry in Van Gogh’s sunflowers reveals independent recruitment of CYCLOIDEA genes in the Asteraceae
MA Chapman, S Tang, D Draeger, S Nambeesan, H Shaffer, JG Barb, ...
PLoS Genet 8 (3), e1002628, 2012
1352012
A genomic scan for selection reveals candidates for genes involved in the evolution of cultivated sunflower (Helianthus annuus)
MA Chapman, CH Pashley, J Wenzler, J Hvala, S Tang, SJ Knapp, ...
The Plant Cell 20 (11), 2931-2945, 2008
1322008
Comparative mapping and rapid karyotypic evolution in the genus Helianthus
JM Burke, Z Lai, M Salmaso, T Nakazato, S Tang, A Heesacker, SJ Knapp, ...
Genetics 167 (1), 449-457, 2004
1302004
The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States
JM Burke, KA Gardner, LH Rieseberg
American Journal of Botany 89 (9), 1550-1552, 2002
1262002
Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae)
MA Chapman, JC Chang, D Weisman, RV Kesseli, JM Burke
Theoretical and Applied Genetics 115 (6), 747-755, 2007
1222007
Development of a 10,000 Locus Genetic Map of the Sunflower Genome Based on Multiple Crosses
JE Bowers, E Bachlava, RL Brunick, LH Rieseberg, SJ Knapp, JM Burke
G3: Genes| Genomes| Genetics 2 (7), 721-729, 2012
1172012
Single nucleotide polymorphisms and linkage disequilibrium in sunflower
JM Kolkman, ST Berry, AJ Leon, MB Slabaugh, S Tang, W Gao, ...
Genetics 177 (1), 457-468, 2007
1172007
Development, polymorphism, and cross-taxon utility of EST–SSR markers from safflower (Carthamus tinctorius L.)
MA Chapman, J Hvala, J Strever, M Matvienko, A Kozik, RW Michelmore, ...
TAG Theoretical and Applied Genetics 120 (1), 85-91, 2009
1102009
Hybrid fitness in the Louisiana irises: analysis of parental and F1 performance
JM Burke, SE Carney, ML Arnold
Evolution 52 (1), 37-43, 1998
1091998
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements
SE Staton, BH Bakken, BK Blackman, MA Chapman, NC Kane, S Tang, ...
The Plant Journal 72, 142-153, 2012
1062012
Quantitative trait locus analysis of the early domestication of sunflower
DM Wills, JM Burke
Genetics 176 (4), 2589-2599, 2007
1052007
DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae)
MA Chapman, JM Burke
BMC Plant Biology 7 (1), 60, 2007
1042007
Progress towards a reference genome for sunflower
NC Kane, N Gill, MG King, JE Bowers, H Berges, J Gouzy, E Bachlava, ...
Botany 89 (7), 429-437, 2011
1012011
Contributions of flowering time genes to sunflower domestication and improvement
BK Blackman, DA Rasmussen, JL Strasburg, AR Raduski, JM Burke, ...
Genetics 187 (1), 271-287, 2011
1012011
Genetic consequences of selection during the evolution of cultivated sunflower
JM Burke, SJ Knapp, LH Rieseberg
Genetics 171 (4), 1933-1940, 2005
1012005
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
Z Lai, NC Kane, A Kozik, KA Hodgins, KM Dlugosch, MS Barker, ...
American journal of botany 99 (2), 209-218, 2012
932012
Genetic interactions and natural selection in Louisiana iris hybrids
JM Burke, TJ Voss, ML Arnold
Evolution 52 (5), 1304-1310, 1998
911998
Sunflower genetic, genomic and ecological resources
NC Kane, JM Burke, L Marek, G Seiler, F Vear, G Baute, SJ Knapp, ...
Molecular ecology resources 13 (1), 10-20, 2013
882013
Crop evolution: from genetics to genomics
JM Burke, JC Burger, MA Chapman
Current opinion in genetics & development 17 (6), 525-532, 2007
862007
Selection on domestication traits and quantitative trait loci in crop–wild sunflower hybrids
EJ BAACK, Y Sapir, MA CHAPMAN, JM BURKE, LH RIESEBERG
Molecular Ecology 17 (2), 666-677, 2008
852008
Chloroplast DNA variation confirms a single origin of domesticated sunflower (Helianthus annuus L.)
DM Wills, JM Burke
Journal of Heredity 97 (4), 403-408, 2006
852006
Population genetic analysis of safflower (Carthamus tinctorius; Asteraceae) reveals a Near Eastern origin and five centers of diversity
MA Chapman, J Hvala, J Strever, JM Burke
American Journal of Botany 97 (5), 831-840, 2010
762010
A genic view of species integration
LH Rieseberg, JM Burke
Journal of Evolutionary Biology 14 (6), 883-886, 2001
702001
Chloroplast SSR polymorphisms in the Compositae and the mode of organellar inheritance in Helianthus annuus
DM Wills, ML Hester, A Liu, JM Burke
Theoretical and Applied Genetics 110 (5), 941-947, 2005
682005
Natural formation of Iris hybrids: experimental evidence on the establishment of hybrid zones
SA Hodges, JM Burke, ML Arnold
Evolution 50 (6), 2504-2509, 1996
671996
Chromosomal evolution and patterns of introgression in Helianthus
JG Barb, JE Bowers, S Renaut, JI Rey, SJ Knapp, LH Rieseberg, ...
Genetics 197 (3), 969-979, 2014
632014
Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives
KA Hodgins, Z Lai, LO Oliveira, DW Still, M Scascitelli, MS Barker, ...
Molecular ecology resources 14 (1), 166-177, 2014
622014
Frequency and spatial patterning of clonal reproduction in Louisiana iris hybrid populations
JM Burke, MR Bulger, RA Wesselingh, ML Arnold
Evolution 54 (1), 137-144, 2000
622000
Genetic analysis of safflower domestication
SA Pearl, JE Bowers, S Reyes-Chin-Wo, RW Michelmore, JM Burke
BMC Plant Biology 14 (1), 43, 2014
542014
Connectivity in gene coexpression networks negatively correlates with rates of molecular evolution in flowering plants
RR Masalia, AJ Bewick, JM Burke
PloS one 12 (7), e0182289, 2017
482017
How reliable is science information on the web?
ES Allen, JM Burke, ME Welch, LH Rieseberg
Nature 402 (6763), 722, 1999
471999
Association mapping in sunflower (Helianthus annuus L.) reveals independent control of apical vs. basal branching
SU Nambeesan, JR Mandel, JE Bowers, LF Marek, D Ebert, J Corbi, ...
BMC plant biology 15 (1), 84, 2015
462015
Fitness effects and genetic architecture of plant–herbivore interactions in sunflower crop–wild hybrids
JM Dechaine, JC Burger, MA Chapman, GJ Seiler, R Brunick, SJ Knapp, ...
New Phytologist 184 (4), 828-841, 2009
462009
Genetic Mapping of Millions of SNPs in Safflower (Carthamus tinctorius L.) via Whole-Genome Resequencing
JE Bowers, SA Pearl, JM Burke
G3: Genes| Genomes| Genetics 6 (7), 2203-2211, 2016
442016
Sunflower as a biofuels crop: An analysis of lignocellulosic chemical properties
AL Ziebell, JG Barb, S Sandhu, BT Moyers, RW Sykes, C Doeppke, ...
Biomass and Bioenergy 59, 208-217, 2013
442013
Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower
MA Chapman, JM Burke
TAG Theoretical and Applied Genetics 125, 897-907, 2012
382012
Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance
SE Staton, JM Burke
BMC genomics 16 (1), 623, 2015
372015
Genetic diversity in Carthamus tinctorius (Asteraceae; safflower), an underutilized oilseed crop
SA Pearl, JM Burke
American journal of botany 101 (10), 1640-1650, 2014
372014
Population Genetics of the Rubber-Producing Russian Dandelion (Taraxacum kok-saghyz)
EV McAssey, EG Gudger, MP Zuellig, JM Burke
PloS one 11 (1), e0146417, 2016
362016
Population genetics of Astragalus bibullatus (Fabaceae) using AFLPs
CJ Baskauf, JM Burke
Journal of Heredity 100 (4), 424-431, 2009
332009
Multiple genomic regions influence root morphology and seedling growth in cultivated sunflower (Helianthus annuus L.) under well-watered and water-limited conditions
RR Masalia, AA Temme, N de leon Torralba, JM Burke
PloS one 13 (9), e0204279, 2018
262018
High genetic diversity and low population structure in Porter’s Sunflower (Helianthus porteri)
SD Gevaert, JR Mandel, JM Burke, LA Donovan
Journal of Heredity 104 (3), 407-415, 2013
252013
Karyotypic evolution of the common and silverleaf sunflower genomes
AF Heesacker, E Bachlava, RL Brunick, JM Burke, LH Rieseberg, ...
The Plant Genome 2 (3), 233-246, 2009
232009
Range-wide phenotypic and genetic differentiation in wild sunflower
EV McAssey, J Corbi, JM Burke
BMC plant biology 16 (1), 249, 2016
222016
Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads
SE Staton, JM Burke
Bioinformatics 31 (11), 1827-1829, 2015
222015
Ecological patterns and genetic analysis of post‐dispersal seed predation in sunflower (Helianthus annuus) crop‐wild hybrids
JM DECHAINE, JC BURGER, JM BURKE
Molecular ecology 19 (16), 3477-3488, 2010
222010
Genome‐wide analysis of allele frequency change in sunflower crop–wild hybrid populations evolving under natural conditions
J Corbi, EJ Baack, JM Dechaine, G Seiler, JM Burke
Molecular ecology 27 (1), 233-247, 2018
212018
Contrasting genetic structure of adults and progeny in a Louisiana Iris hybrid population
RS Cornman, JM Burke, RA Wesselingh, ML Arnold
Evolution 58 (12), 2669-2681, 2004
212004
Key traits and genes associate with salinity tolerance independent from vigor in cultivated sunflower
AA Temme, KL Kerr, RR Masalia, JM Burke, LA Donovan
Plant Physiology 184 (2), 865-880, 2020
202020
Impact of Deficit Irrigation on Shallow Saline Groundwater Contribution and Sunflower Productivity in the Imperial Valley, California
MG Eltarabily, JM Burke, KM Bali
Water 12 (2), 571, 2020
202020
Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms
JE Bowers, S Nambeesan, J Corbi, MS Barker, LH Rieseberg, SJ Knapp, ...
PloS one 7 (12), e51360, 2012
202012
Molecular evidence and the origin of the domesticated sunflower
L Rieseberg, JM Burke
Proceedings of the National Academy of Sciences of the United States of …, 2008
192008
Effect of Deficit Irrigation on Nitrogen Uptake of Sunflower in the Low Desert Region of California
MG Eltarabily, JM Burke, KM Bali
Water 11 (11), 2340, 2019
182019
A unified single nucleotide polymorphism map of sunflower (Helianthus annuus L.) derived from current genomic resources
BS Hulke, CJ Grassa, JE Bowers, JM Burke, L Qi, ZI Talukder, ...
Crop Science 55 (4), 1696-1702, 2015
182015
Population genetic analysis reveals a homoploid hybrid origin of Stephanomeria diegensis (Asteraceae)
NA Sherman, JM Burke
Molecular Ecology 18 (19), 4049-4060, 2009
182009
Genome-Wide Association Mapping of Floral Traits in Cultivated Sunflower (Helianthus annuus)
JA Dowell, EC Reynolds, TP Pliakas, JR Mandel, JM Burke, LA Donovan, ...
Journal of Heredity 110 (3), 275-286, 2019
172019
Molecular Evolution of Candidate Genes for Crop-Related Traits in Sunflower (Helianthus annuus L.)
JR Mandel, EV McAssey, S Nambeesan, E Garcia-Navarro, JM Burke
PLOS ONE 9 (6), e99620, 2014
162014
Genetic Architecture of Novel Traits in the Hopi Sunflower
DM Wills, H Abdel-Haleem, SJ Knapp, JM Burke
Journal of Heredity 101 (6), 727-736, 2010
162010
The genomics of linkage drag in inbred lines of sunflower
K Huang, M Jahani, J Gouzy, A Legendre, S Carrere, JM Lázaro-Guevara, ...
Proceedings of the National Academy of Sciences 120 (14), e2205783119, 2023
152023
Genetic diversity and population structure in the rare Algodones sunflower (Helianthus niveus ssp. tephrodes)
JR Mandel, EF Milton, LA Donovan, SJ Knapp, JM Burke
Conservation Genetics 14, 31-40, 2013
142013
Nectar characteristics of interspecific hybrids and their parents in Aesculus (Hippocastanaceae) and Iris (Iridaceae)
JM Burke, R Wyatt, CW DePamphilis, ML Arnold
Journal of the Torrey Botanical Society 127 (3), 200-206, 2000
142000
Phylogeography and the evolutionary history of sunflower (Helianthus annuus L.): wild diversity and the dynamics of domestication
B Park, JM Burke
Genes 11 (3), 266, 2020
132020
Genetic variation and evidence of hybridization in the genus Rhus (Anacardiaceae)
JM Burke, JL Hamrick
Journal of Heredity 93 (1), 37-41, 2002
122002
Expression complementation of gene presence/absence polymorphisms in hybrids contributes importantly to heterosis in sunflower
JS Lee, M Jahani, K Huang, JR Mandel, LF Marek, JM Burke, ...
Journal of Advanced Research 42, 83-98, 2022
112022
GC content of plant genes is linked to past gene duplications
JE Bowers, H Tang, JM Burke, AH Paterson
Plos one 17 (1), e0261748, 2022
112022
Selection on Crop-Derived Traits and QTL in Sunflower (Helianthus annuus) Crop-Wild Hybrids under Water Stress
BR Owart, J Corbi, JM Burke, JM Dechaine
PloS one 9 (7), e102717, 2014
112014
Genetic control of arbuscular mycorrhizal colonization by Rhizophagus intraradices in Helianthus annuus (L.)
KN Stahlhut, JA Dowell, AA Temme, JM Burke, EW Goolsby, CM Mason
Mycorrhiza 31 (6), 723-734, 2021
102021
Isolation and characterization of microsatellites in Iris
JM Burke, ML Arnold
Molecular Ecology 8 (6), 1091-1092, 1999
101999
Phenotypic and transcriptomic responses of cultivated sunflower seedlings (Helianthus annuus L.) to four abiotic stresses
MH Barnhart, RR Masalia, LJ Mosley, JM Burke
PloS one 17 (9), e0275462, 2022
72022
Sequence validation of candidates for selectively important genes in sunflower
MA Chapman, JR Mandel, JM Burke
PloS one 8 (8), e71941, 2013
62013
When good plants go bad…
JM Burke
Evolution 58 (7), 1637-1638, 2004
42004
Genomic regions associate with major axes of variation driven by gas exchange and leaf construction traits in cultivated sunflower (Helianthus annuus L.)
AM Earley, AA Temme, CR Cotter, JM Burke
The Plant Journal, 2022
32022
Polluting gene flow from crops: Radishes gone wild
MA Chapman, JM Burke
Heredity 97 (6), 379-380, 2006
32006
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