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Yannis Nevers
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OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more
AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ...
Nucleic acids research 49 (D1), D373-D379, 2021
1522021
OrthoInspector 3.0: open portal for comparative genomics
Y Nevers, A Kress, A Defosset, R Ripp, B Linard, JD Thompson, O Poch, ...
Nucleic acids research 47 (D1), D411-D418, 2019
522019
Insights into ciliary genes and evolution from multi-level phylogenetic profiling
Y Nevers, MK Prasad, L Poidevin, K Chennen, A Allot, A Kress, R Ripp, ...
Molecular biology and evolution 34 (8), 2016-2034, 2017
502017
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ...
Nucleic acids research 48 (W1), W538-W545, 2020
392020
The quest for orthologs orthology benchmark service in 2022
Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ...
Nucleic Acids Research 50 (W1), W623-W632, 2022
292022
Ten years of collaborative progress in the quest for orthologs
B Linard, I Ebersberger, SE McGlynn, N Glover, T Mochizuki, M Patricio, ...
Molecular biology and evolution 38 (8), 3033-3045, 2021
272021
Protein length distribution is remarkably uniform across the tree of life
Y Nevers, NM Glover, C Dessimoz, O Lecompte
Genome Biology 24 (1), 135, 2023
10*2023
How to build phylogenetic species trees with OMA [version 2; peer review: 2 approved with reservations]
D Dylus, Y Nevers, AM Altenhoff, A Gürtler, C Dessimoz, NM Glover
F1000Research 9, 2022
102022
Orthology: promises and challenges
Y Nevers, A Defosset, O Lecompte
Evolutionary biology—a transdisciplinary approach, 203-228, 2020
102020
New genome assembly of the barn owl (Tyto alba alba)
AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ...
Ecology and evolution 10 (5), 2284-2298, 2020
92020
Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses
D Moi, C Bernard, M Steinegger, Y Nevers, M Langleib, C Dessimoz
BioRXiv, 2023.09. 19.558401, 2023
82023
MyGeneFriends: a social network linking genes, genetic diseases, and researchers
A Allot, K Chennen, Y Nevers, L Poidevin, A Kress, R Ripp, JD Thompson, ...
Journal of medical Internet research 19 (6), e6676, 2017
72017
Quality assessment of gene repertoire annotations with OMArk
Y Nevers, A Warwick Vesztrocy, V Rossier, CM Train, A Altenhoff, ...
Nature Biotechnology, 1-10, 2024
6*2024
Evolutionary Biology—A Transdisciplinary Approach
Y Nevers, A Defosset, O Lecompte
52020
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem
AM Altenhoff, A Warwick Vesztrocy, C Bernard, CM Train, ...
Nucleic Acids Research 52 (D1), D513-D521, 2024
42024
A linear time solution to the labeled Robinson–Foulds distance problem
S Briand, C Dessimoz, N El-Mabrouk, Y Nevers
Systematic Biology 71 (6), 1391-1403, 2022
42022
Proteome-scale detection of differential conservation patterns at protein and subprotein levels with BLUR
A Defosset, A Kress, Y Nevers, R Ripp, JD Thompson, O Poch, ...
Genome Biology and Evolution 13 (1), evaa248, 2021
42021
Novel approach combining transcriptional and evolutionary signatures to identify new multiciliation genes
A Defosset, D Merlat, L Poidevin, Y Nevers, A Kress, O Poch, O Lecompte
Genes 12 (9), 1452, 2021
22021
Genome Annotation and Other Post-Assembly Workflows for the Tree of Life
T Brown, KA Collier, F Cruz, A Gkanogiannis, S Joye-Dind, Y Nevers, ...
2024
Orthology inference at scale with FastOMA
S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ...
bioRxiv, 2024.01. 29.577392, 2024
2024
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Articles 1–20