| Pydna: a simulation and documentation tool for DNA assembly strategies using python F Pereira, F Azevedo, Â Carvalho, GF Ribeiro, MW Budde, B Johansson BMC bioinformatics 16, 1-10, 2015 | 165 | 2015 |
| Metabolic engineering of Saccharomyces cerevisiae ethanol strains PE-2 and CAT-1 for efficient lignocellulosic fermentation A Romaní, F Pereira, B Johansson, L Domingues Bioresource technology 179, 150-158, 2015 | 92 | 2015 |
| Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae T Strucko, K Zirngibl, F Pereira, E Kafkia, ET Mohamed, M Rettel, F Stein, ... Metabolic engineering 47, 73-82, 2018 | 59 | 2018 |
| Yeast metabolic chassis designs for diverse biotechnological products P Jouhten, T Boruta, S Andrejev, F Pereira, I Rocha, KR Patil Scientific reports 6 (1), 29694, 2016 | 42 | 2016 |
| Operation of a TCA cycle subnetwork in the mammalian nucleus E Kafkia, A Andres-Pons, K Ganter, M Seiler, TS Smith, A Andrejeva, ... Science advances 8 (35), eabq5206, 2022 | 30 | 2022 |
| Improved gap repair cloning in yeast: treatment of the gapped vector with Taq DNA polymerase avoids vector self‐ligation D Bessa, F Pereira, R Moreira, B Johansson, O Queirós Yeast 29 (10), 419-423, 2012 | 28 | 2012 |
| Co-translational assembly orchestrates competing biogenesis pathways M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ... Nature communications 13 (1), 1224, 2022 | 25 | 2022 |
| Adaptive laboratory evolution of microbial co‐cultures for improved metabolite secretion D Konstantinidis, F Pereira, EM Geissen, K Grkovska, E Kafkia, P Jouhten, ... Molecular systems biology 17 (8), e10189, 2021 | 25 | 2021 |
| CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate F Gutmann, C Jann, F Pereira, A Johansson, LM Steinmetz, KR Patil Biotechnology for Biofuels 14, 1-14, 2021 | 19 | 2021 |
| Yeast pathway kit: a method for metabolic pathway assembly with automatically simulated executable documentation F Pereira, F Azevedo, NS Parachin, B Hahn-Hagerdal, ... ACS Synthetic Biology 5 (5), 386-394, 2016 | 18 | 2016 |
| The MX4blaster cassette: repeated and clean Saccharomyces cerevisiae genome modification using the genome-wide deletion collection  Carvalho, F Pereira, B Johansson FEMS Yeast Research 13 (8), 711-719, 2013 | 15 | 2013 |
| Predictive evolution of metabolic phenotypes using model‐designed environments P Jouhten, D Konstantinidis, F Pereira, S Andrejev, K Grkovska, S Castillo, ... Molecular Systems Biology 18 (10), e10980, 2022 | 8 | 2022 |
| Model‐guided development of an evolutionarily stable yeast chassis F Pereira, H Lopes, P Maia, B Meyer, J Nocon, P Jouhten, ... Molecular systems biology 17 (7), e10253, 2021 | 7 | 2021 |
| Plasmids for in vivo construction of integrative Candida albicans vectors in Saccharomyces cerevisiae N Vieira, F Pereira, M Casal, AJP Brown, S Paiva, B Johansson Yeast 27 (11), 933-939, 2010 | 4 | 2010 |
| Co-translational assembly counteracts promiscuous interactions M Seidel, A Becker, F Pereira, JJM Landry, NTD de Azevedo, CM Fusco, ... bioRxiv, 2021.07. 13.452229, 2021 | 2 | 2021 |
| Yeast chassis design for production of dicarboxylic acids F Pereira, H Lopes, P Maia, B Meyer, D Konstantinidis, E Kafkia, P Kötter, ... Elsevier, 2018 | 2 | 2018 |
| Directed Evolution of a Mutualistic Community of Organisms for the Production of a Nutrient or a Nutraceutical D Konstantinidis, KR Patil, F Pereira, CDML Machado, KIM YongKyu US Patent App. 17/265,829, 2021 | 1 | 2021 |
| 3.53 Synthetic Biology: An Overview  de Carvalho, KG Vanegas, F Pereira, S Theobald, A Takos Comprehensive Biotechnology 3rd Edition, 659-670, 2019 | 1 | 2019 |
| Structure–Activity Relationships of Natural and Semisynthetic Plecomacrolides Suggest Distinct Pathways for HIV-1 Immune Evasion and Vacuolar ATPase-Dependent Lysosomal … M McCauley, M Huston, AR Condren, F Pereira, J Cline, M Yaple-Maresh, ... Journal of medicinal chemistry, 2024 | | 2024 |
| Predictive evolution of metabolic phenotypes using model-designed selection niches P Jouhten, D Konstantinidis, F Pereira, S Andrejev, K Grkovska, P Ghiachi, ... bioRxiv, 2021.05. 14.443989, 2021 | | 2021 |
Odília QueirósAssistant Professor, ISCS-N/CESPU, Gandra, PortugalVerified email at iscsn.cespu.pt
