| Complex‐centric proteome profiling by SEC‐SWATH‐MS M Heusel, I Bludau, G Rosenberger, R Hafen, M Frank, ... Molecular systems biology 15 (1), e8438, 2019 | 137 | 2019 |
| From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions M Mori, Z Zhang, A Banaei‐Esfahani, JB Lalanne, H Okano, BC Collins, ... Molecular systems biology 17 (5), e9536, 2021 | 85 | 2021 |
| The potential roles of actin in the nucleus K Falahzadeh, A Banaei-Esfahani, M Shahhoseini Cell Journal (Yakhteh) 17 (1), 7, 2015 | 72 | 2015 |
| A case for a human immuno-peptidome project consortium E Caron, R Aebersold, A Banaei-Esfahani, C Chong, ... Immunity 47 (2), 203-208, 2017 | 68 | 2017 |
| Elucidation of host–pathogen protein–protein interactions to uncover mechanisms of host cell rewiring C Nicod, A Banaei-Esfahani, BC Collins Current opinion in microbiology 39, 7-15, 2017 | 65 | 2017 |
| Quantitative proteome landscape of the NCI-60 cancer cell lines T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, ... Iscience 21, 664-680, 2019 | 49 | 2019 |
| Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival T Cortes, OT Schubert, A Banaei-Esfahani, BC Collins, R Aebersold, ... Scientific reports 7 (1), 8208, 2017 | 45 | 2017 |
| Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes I Bludau, M Heusel, M Frank, G Rosenberger, R Hafen, ... Nature protocols, 1-47, 2020 | 42 | 2020 |
| HCSD: the human cancer secretome database A Feizi, A Banaei-Esfahani, J Nielsen Database 2015, 2015 | 34 | 2015 |
| Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis A Banaei-Esfahani, C Nicod, R Aebersold, BC Collins Current opinion in microbiology 39, 64-72, 2017 | 29 | 2017 |
| Identification of genes involved in glaucoma pathogenesis using combined network analysis and empirical studies H Moazzeni, M Mirrahimi, A Moghadam, A Banaei-Esfahani, S Yazdani, ... Human Molecular Genetics 28 (21), 3637-3663, 2019 | 13 | 2019 |
| A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model T Sajic, R Ciuffa, V Lemos, P Xu, V Leone, C Li, EG Williams, G Makris, ... Scientific reports 9 (1), 6913, 2019 | 13 | 2019 |
| MicroRNAs that target RGS5 A Banaei-Esfahani, H Moazzeni, PN Nosar, S Amin, E Arefian, ... Iranian journal of basic medical sciences 18 (2), 108, 2015 | 12 | 2015 |
| Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves C Wu, M Mori, M Abele, A Banaei-Esfahani, Z Zhang, H Okano, ... Nature microbiology 8 (2), 347-359, 2023 | 11 | 2023 |
| Integrative systems analysis identifies genetic and dietary modulators of bile acid homeostasis H Li, A Perino, Q Huang, GVG Von Alvensleben, A Banaei-Esfahani, ... Cell Metabolism 34 (10), 1594-1610. e4, 2022 | 11 | 2022 |
| Expression dysregulation as a mediator of fitness costs in antibiotic resistance A Trauner, A Banaei-Esfahani, SM Gygli, P Warmer, J Feldmann, ... Antimicrobial agents and chemotherapy 65 (9), 10.1128/aac. 00504-21, 2021 | 6 | 2021 |
| Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines. iScience 2019, 21, 664–680 T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, ... DOI, 0 | 6 | |
| Quantitative proteome landscape of the NCI-60 cancer cell lines. iScience 21, 664–680 T Guo, A Luna, VN Rajapakse, CC Koh, Z Wu, W Liu, Y Sun, H Gao, ... | 5 | 2019 |
| M. tuberculosis relies on trace oxygen to maintain energy homeostasis and survive in hypoxic environments NP Kalia, S Singh, K Hards, CY Cheung, E Sviriaeva, A Banaei-Esfahani, ... Cell Reports 42 (5), 2023 | 4 | 2023 |
| Resource misallocation as a mediator of fitness costs in antibiotic resistance A Trauner, A Banaei-Esfahani, S Gygli, P Warmer, J Eeldmann, ... bioRxiv, 456434, 2018 | 4 | 2018 |
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