| Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans IA Nikonorova, J Wang, AL Cope, PE Tilton, KM Power, JD Walsh, ... Current Biology 32 (9), 1924-1936. e6, 2022 | 25 | 2022 |
| The landscape of transcriptional and translational changes over 22 years of bacterial adaptation JS Favate, S Liang, AL Cope, SS Yadavalli, P Shah Elife 11, e81979, 2022 | 20 | 2022 |
| AnaCoDa: analyzing codon data with Bayesian mixture models C Landerer, A Cope, R Zaretzki, MA Gilchrist Bioinformatics 34 (14), 2496-2498, 2018 | 15 | 2018 |
| Quantifying codon usage in signal peptides: Gene expression and amino acid usage explain apparent selection for inefficient codons AL Cope, RL Hettich, MA Gilchrist Biochimica et Biophysica Acta - Biomembranes Volume 1860 1860 (12), 2479-2485, 2018 | 14 | 2018 |
| Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods AL Cope, BC O’Meara, MA Gilchrist BMC genomics 21, 1-17, 2020 | 11 | 2020 |
| On the Decoupling of Evolutionary Changes in mRNA and Protein Levels D Jiang, AL Cope, J Zhang, M Pennell Molecular Biology and Evolution 40 (8), msad169, 2023 | 9 | 2023 |
| Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach AL Cope, MA Gilchrist BMC genomics 23 (1), 408, 2022 | 9 | 2022 |
| riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow AL Cope, F Anderson, J Favate, M Jackson, A Mok, A Kurowska, J Liu, ... Bioinformatics, 2022 | 6 | 2022 |
| Exploring ribosome-positioning on translating transcripts with ribosome profiling AL Cope, S Vellappan, JS Favate, KS Skalenko, SS Yadavalli, P Shah Post-Transcriptional Gene Regulation, 83-110, 2022 | 6 | 2022 |
| Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli KS Skalenko, L Li, Y Zhang, IO Vvedenskaya, JT Winkelman, AL Cope, ... Proceedings of the National Academy of Sciences 118 (27), 2021 | 6 | 2021 |
| Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets S Poudel, AL Cope, KB O’Dell, AM Guss, H Seo, CT Trinh, RL Hettich Biotechnology for Biofuels 14 (1), 116, 2021 | 5 | 2021 |
| Intragenomic variation in non-adaptive nucleotide biases causes underestimation of selection on synonymous codon usage AL Cope, P Shah PLoS genetics 18 (6), e1010256, 2022 | 2 | 2022 |
| Re-examining Correlations Between Synonymous Codon Usage and Protein Bond Angles in Escherichia coli OJ Akeju, AL Cope Genome Biology and Evolution 16 (5), evae080, 2024 | | 2024 |
| Determining the effects of temperature on the evolution of bacterial tRNA pools V Jain, AL Cope bioRxiv, 2023 | | 2023 |
| Maintaining protein localization, structure, and functional interactions via codon usage and coevolution of gene expression: Combining evolutionary bioinformatics with omics … A Cope | | 2020 |
Michael A. GilchristAssociate Professor, University of Tennessee, KnoxvilleVerified email at utk.edu
