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Ting Huang
Ting Huang
Northeastern University
Verified email at northeastern.edu - Homepage
Title
Cited by
Cited by
Year
Protein inference: a review
T Huang, J Wang, W Yu, Z He
Briefings in bioinformatics 13 (5), 586-614, 2012
1482012
Comparison of protein quantification in a complex background by DIA and TMT workflows with fixed instrument time
J Muntel, J Kirkpatrick, R Bruderer, T Huang, O Vitek, A Ori, L Reiter
Journal of proteome research 18 (3), 1340-1351, 2019
1082019
MSstatsTMT: statistical detection of differentially abundant proteins in experiments with isobaric labeling and multiple mixtures
T Huang, M Choi, M Tzouros, S Golling, NJ Pandya, B Banfai, T Dunkley, ...
Molecular & Cellular Proteomics 19 (10), 1706-1723, 2020
962020
MassIVE. quant: a community resource of quantitative mass spectrometry–based proteomics datasets
M Choi, J Carver, C Chiva, M Tzouros, T Huang, TH Tsai, B Pullman, ...
Nature methods 17 (10), 981-984, 2020
632020
Combining precursor and fragment information for improved detection of differential abundance in data independent acquisition
T Huang, R Bruderer, J Muntel, Y Xuan, O Vitek, L Reiter
Molecular & Cellular Proteomics 19 (2), 421-430, 2020
482020
A linear programming model for protein inference problem in shotgun proteomics
T Huang, Z He
Bioinformatics 28 (22), 2956-2962, 2012
262012
ProteinLasso: A Lasso regression approach to protein inference problem in shotgun proteomics
T Huang, H Gong, C Yang, Z He
Computational biology and chemistry 43, 46-54, 2013
212013
MSstats Version 4.0: statistical analyses of quantitative mass spectrometry-based proteomic experiments with chromatography-based quantification at scale
D Kohler, M Staniak, TH Tsai, T Huang, N Shulman, OM Bernhardt, ...
Journal of Proteome Research 22 (5), 1466-1482, 2023
132023
Protein inference: A protein quantification perspective
Z He, T Huang, X Liu, P Zhu, B Teng, S Deng
Computational biology and chemistry 63, 21-29, 2016
132016
MSstatsTMT: Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
T Huang, M Choi, S Hao, O Vitek
R package Bioconductor, v1, 2020
112020
Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response
T Maculins, E Verschueren, T Hinkle, M Choi, P Chang, C Chalouni, ...
Elife 10, e62320, 2021
102021
MSstatsPTM: statistical relative quantification of posttranslational modifications in bottom-up mass spectrometry-based proteomics
D Kohler, TH Tsai, E Verschueren, T Huang, T Hinkle, L Phu, M Choi, ...
Molecular & Cellular Proteomics 22 (1), 2023
72023
Decoy-free protein-level false discovery rate estimation
B Teng, T Huang, Z He
Bioinformatics 30 (5), 675-681, 2014
62014
Protein inference
Z He, T Huang, C Zhao, B Teng
Modern Proteomics–Sample Preparation, Analysis and Practical Applications …, 2016
42016
Protein Coronas on Functionalized Nanoparticles Enable Quantitative and Precise Large-Scale Deep Plasma Proteomics
T Huang, J Wang, A Stukalov, MKR Donovan, S Ferdosi, L Williamson, ...
bioRxiv, 2023
32023
Statistical detection of differentially abundant proteins in experiments with repeated measures designs and isobaric labeling
T Huang, M Staniak, F Veiga Leprevost, AM Figueroa-Navedo, AR Ivanov, ...
Journal of Proteome Research 22 (8), 2641-2659, 2023
32023
MSstatsShiny: a GUI for versatile, scalable, and reproducible statistical analyses of quantitative proteomic experiments
D Kohler, M Kaza, C Pasi, T Huang, M Staniak, D Mohandas, E Sabido, ...
Journal of Proteome Research 22 (2), 551-556, 2023
22023
Longitudinal Deep Multi-Omics Profiling in a CLN3Δex7/8 Minipig Model Reveals Novel Biomarker Signatures for Batten Disease
MJ Rechtzigel, B Lee, C Neville, T Huang, AR Campos, ...
bioRxiv, 2023.09. 20.558629, 2023
2023
Multiplexed proteomics of autophagy deficient macrophages reveals enhanced anti-microbial immunity via the oxidative stress response
T Maculins, E Verschueren, T Hinkle, P Chang, C Chalouni, J Lim, ...
The Journal of Immunology 206 (1_Supplement), 112.01-112.01, 2021
2021
Statistical Design and Analysis of Mass Spectrometry-Based Proteomic Experiments with Isobaric Labeling
T Huang
Northeastern University, 2021
2021
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