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Michael S. Chimenti
Michael S. Chimenti
Director of Bioinformatics, Iowa Institute of Human Genetics, University of Iowa
Verified email at uiowa.edu - Homepage
Title
Cited by
Cited by
Year
Dysregulated pH: a perfect storm for cancer progression
BA Webb, M Chimenti, MP Jacobson, DL Barber
Nature Reviews Cancer 11 (9), 671-677, 2011
20702011
pH sensing by FAK-His58 regulates focal adhesion remodeling
CH Choi, BA Webb, MS Chimenti, MP Jacobson, DL Barber
Journal of Cell Biology 202 (6), 849-859, 2013
1052013
A buried lysine that titrates with a normal pKa: Role of conformational flexibility at the protein–water interface as a determinant of pKavalues
MJ Harms, JL Schlessman, MS Chimenti, GR Sue, A Damjanović, ...
Protein Science 17 (5), 833-845, 2008
982008
Multisite phosphorylation disrupts arginine-glutamate salt bridge networks required for binding of cytoplasmic linker-associated protein 2 (CLASP2) to end-binding protein 1 (EB1)
P Kumar, MS Chimenti, H Pemble, A Schönichen, O Thompson, ...
Journal of Biological Chemistry 287 (21), 17050-17064, 2012
912012
Direct evidence for deprotonation of a lysine side chain buried in the hydrophobic core of a protein
Y Takayama, CA Castañeda, M Chimenti, B García-Moreno, J Iwahara
Journal of the American Chemical Society 130 (21), 6714-6715, 2008
632008
Structural reorganization triggered by charging of Lys residues in the hydrophobic interior of a protein
MS Chimenti, VS Khangulov, AC Robinson, A Heroux, A Majumdar, ...
Structure 20 (6), 1071-1085, 2012
592012
Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease
KL Baran, MS Chimenti, JL Schlessman, CA Fitch, KJ Herbst, ...
Journal of molecular biology 379 (5), 1045-1062, 2008
592008
High-pressure SAXS study of folded and unfolded ensembles of proteins
MA Schroer, M Paulus, C Jeworrek, C Krywka, S Schmacke, Y Zhai, ...
Biophysical Journal 99 (10), 3430-3437, 2010
532010
Traumatic brain injury results in unique microglial and astrocyte transcriptomes enriched for type I interferon response
BP Todd, MS Chimenti, Z Luo, PJ Ferguson, AG Bassuk, EA Newell
Journal of neuroinflammation 18, 1-15, 2021
482021
Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein
MS Chimenti, CA Castañeda, A Majumdar
Journal of molecular biology 405 (2), 361-377, 2011
472011
High throughput genomic sequencing of bioaerosols in broiler chicken production facilities
KM O'Brien, MS Chimenti, M Farnell, T Tabler, T Bair, JL Bray, ...
Microbial biotechnology 9 (6), 782-791, 2016
352016
Structural plasticity of staphylococcal nuclease probed by perturbation with pressure and pH
R Kitahara, K Hata, A Maeno, K Akasaka, MS Chimenti, ...
Proteins: Structure, Function, and Bioinformatics 79 (4), 1293-1305, 2011
342011
Allosteric indole amide inhibitors of p97: identification of a novel probe of the ubiquitin pathway
C Alverez, SL Bulfer, R Chakrasali, MS Chimenti, RJ Deshaies, N Green, ...
ACS medicinal chemistry letters 7 (2), 182-187, 2016
322016
TAZ-CAMTA1 and YAP-TFE3 alter the TAZ/YAP transcriptome by recruiting the ATAC histone acetyltransferase complex
N Merritt, K Garcia, D Rajendran, ZY Lin, X Zhang, KA Mitchell, ...
Elife 10, e62857, 2021
282021
Effect of freshwater mussels on the vertical distribution of anaerobic ammonia oxidizers and other nitrogen-transforming microorganisms in upper Mississippi river sediment
EM Black, MS Chimenti, CL Just
PeerJ 5, e3536, 2017
262017
Direct and indirect immune effects of CMP-001, a virus-like particle containing a TLR9 agonist
SA Sabree, AP Voigt, SE Blackwell, A Vishwakarma, MS Chimenti, ...
Journal for immunotherapy of cancer 9 (6), 2021
202021
Differential gene expression analysis for multi-subject single-cell RNA-sequencing studies with aggregateBioVar
AL Thurman, JA Ratcliff, MS Chimenti, AA Pezzulo
Bioinformatics 37 (19), 3243-3251, 2021
192021
Systemic mesenchymal stem cell treatment mitigates structural and functional retinal ganglion cell degeneration in a mouse model of multiple sclerosis
OW Gramlich, AJ Brown, CR Godwin, MS Chimenti, LK Boland, ...
Translational vision science & technology 9 (8), 16-16, 2020
192020
Ten simple rules for providing effective bioinformatics research support
MFR Kumuthini J, Chimenti M, Nahnsen S, Peltzer A, Meraba R
PLoS Comput Biol 16 (3), 2020
192020
A fragment-based ligand screen against part of a large protein machine: the ND1 domains of the AAA+ ATPase p97/VCP
MS Chimenti, SL Bulfer, RJ Neitz, AR Renslo, MP Jacobson, TL James, ...
Journal of Biomolecular Screening 20 (6), 788-800, 2015
182015
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