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Junko Tsuji
Junko Tsuji
Broad Institute of MIT and Harvard
Verified email at broadinstitute.org
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Cited by
Cited by
Year
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11362020
MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites*[S]
Y Fukasawa, J Tsuji, SC Fu, K Tomii, P Horton, K Imai
Molecular & Cellular Proteomics 14 (4), 1113-1126, 2015
5132015
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
3222015
Interaction of tau with the RNA-binding protein TIA1 regulates tau pathophysiology and toxicity
T Vanderweyde, DJ Apicco, K Youmans-Kidder, PEA Ash, C Cook, ...
Cell reports 15 (7), 1455-1466, 2016
2832016
Durvalumab plus tremelimumab alone or in combination with low-dose or hypofractionated radiotherapy in metastatic non-small-cell lung cancer refractory to previous PD (L)-1 …
JD Schoenfeld, A Giobbie-Hurder, S Ranasinghe, KZ Kao, A Lako, J Tsuji, ...
The Lancet Oncology 23 (2), 279-291, 2022
1302022
Mammalian NUMT insertion is non-random
J Tsuji, MC Frith, K Tomii, P Horton
Nucleic acids research 40 (18), 9073-9088, 2012
1122012
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
892020
Donor clonal hematopoiesis and recipient outcomes after transplantation
CJ Gibson, HT Kim, L Zhao, HM Murdock, B Hambley, A Ogata, ...
Journal of Clinical Oncology 40 (2), 189, 2022
872022
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions
Y Saito, J Tsuji, T Mituyama
Nucleic acids research 42 (6), e45-e45, 2014
742014
The role of H3K4me3 in transcriptional regulation is altered in Huntington’s disease
X Dong, J Tsuji, A Labadorf, P Roussos, JF Chen, RH Myers, S Akbarian, ...
PloS one 10 (12), e0144398, 2015
602015
Annotation of chromatin states in 66 complete mouse epigenomes during development
A van der Velde, K Fan, J Tsuji, JE Moore, MJ Purcaro, HE Pratt, Z Weng
Communications Biology 4 (1), 239, 2021
382021
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data
J Tsuji, Z Weng
Briefings in bioinformatics 17 (6), 938-952, 2016
352016
DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data
J Tsuji, Z Weng
PloS one 11 (10), e0164228, 2016
262016
Phase II clinical trial of everolimus in a pan-cancer cohort of patients with mTOR pathway alterations
E Adib, K Klonowska, K Giannikou, KT Do, S Pruitt-Thompson, K Bhushan, ...
Clinical Cancer Research 27 (14), 3845-3853, 2021
252021
Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods
W Zhang, X Zhu, Y Fu, J Tsuji, Z Weng
BMC bioinformatics 18, 1-11, 2017
252017
Palladium-catalyzed one-pot synthesis of N-sulfonyl, N-phosphoryl, and N-acyl guanidines
G Qiao, Z Zhang, B Huang, L Zhu, F Xiao, Z Zhang
Synthesis 50 (02), 330-340, 2018
192018
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
152020
Integrated miRNA-/mRNA-Seq of the habenulo-interpeduncular circuit during acute nicotine withdrawal
AP Casserly, J Tsuji, R Zhao-Shea, CB Smith, S Molas, AR Tapper, ...
Scientific Reports 10 (1), 813, 2020
112020
Circulating tumor DNA is prognostic in intermediate-risk rhabdomyosarcoma: a report from the Children's Oncology Group
S Abbou, K Klega, J Tsuji, M Tanhaemami, D Hall, DA Barkauskas, ...
Journal of Clinical Oncology 41 (13), 2382-2393, 2023
102023
Clinical Efficacy and Whole-Exome Sequencing of Liquid Biopsies in a Phase IB/II Study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor–Positive Breast Cancer
J Tsuji, T Li, A Grinshpun, T Coorens, D Russo, L Anderson, R Rees, ...
Clinical Cancer Research 28 (23), 5066-5078, 2022
82022
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