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Siva Kasinathan
Siva Kasinathan
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
High-resolution mapping of transcription factor binding sites on native chromatin
S Kasinathan, GA Orsi, GE Zentner, K Ahmad, S Henikoff
Nature methods 11 (2), 203-209, 2014
1992014
Nuclear α1-adrenergic receptors signal activated ERK localization to caveolae in adult cardiac myocytes
CD Wright, Q Chen, NL Baye, Y Huang, CL Healy, S Kasinathan, ...
Circulation research 103 (9), 992-1000, 2008
1692008
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
GE Zentner, S Kasinathan, B Xin, R Rohs, S Henikoff
Nature communications 6 (1), 8733, 2015
1652015
Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling
FA Steiner, PB Talbert, S Kasinathan, RB Deal, S Henikoff
Genome research 22 (4), 766-777, 2012
1512012
Non-B-form DNA is enriched at centromeres
S Kasinathan, S Henikoff
Molecular biology and evolution 35 (4), 949-962, 2018
1152018
A unique chromatin complex occupies young α-satellite arrays of human centromeres
JG Henikoff, J Thakur, S Kasinathan, S Henikoff
Science advances 1 (1), e1400234, 2015
982015
Acceleration of genetic gain in cattle by reduction of generation interval
P Kasinathan, H Wei, T Xiang, JA Molina, J Metzger, D Broek, ...
Scientific Reports 5 (1), 8674, 2015
752015
Massively multiplex single-molecule oligonucleosome footprinting
NJ Abdulhay, CP McNally, LJ Hsieh, S Kasinathan, A Keith, LS Estes, ...
Elife 9, e59404, 2020
602020
High-resolution mapping defines the cooperative architecture of Polycomb response elements
GA Orsi, S Kasinathan, KT Hughes, S Saminadin-Peter, S Henikoff, ...
Genome research 24 (5), 809-820, 2014
602014
Simple and Complex Centromeric Satellites in Drosophila Sibling Species
PB Talbert, S Kasinathan, S Henikoff
Genetics 208 (3), 977-990, 2018
432018
Mapping regulatory factors by immunoprecipitation from native chromatin
GA Orsi, S Kasinathan, GE Zentner, S Henikoff, K Ahmad
Current protocols in molecular biology 110 (1), 21.31. 1-21.31. 25, 2015
272015
Remarkable evolutionary plasticity of centromeric chromatin
S Henikoff, J Thakur, S Kasinathan, PB Talbert
Cold Spring Harbor Symposia on Quantitative Biology 82, 71-82, 2017
192017
5-Aza-CdR delivers a gene body blow
S Kasinathan, S Henikoff
Cancer cell 26 (4), 449-451, 2014
122014
The glucose-sensing transcription factor MLX balances metabolism and stress to suppress apoptosis and maintain spermatogenesis
PA Carroll, BW Freie, PF Cheng, S Kasinathan, H Gu, T Hedrich, ...
PLoS biology 19 (10), e3001085, 2021
72021
Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler
NJ Abdulhay, LJ Hsieh, CP McNally, MS Ostrowski, CM Moore, ...
Nature Structural & Molecular Biology 30 (10), 1571-1581, 2023
42023
Single-fiber nucleosome density shapes the regulatory output of a mammalian chromatin remodeling enzyme
NJ Abdulhay, LJ Hsieh, CP McNally, M Ketavarapu, S Kasinathan, ...
BioRxiv, 2021.12. 10.472156, 2021
32021
Sensitive multimodal profiling of native DNA by transposase-mediated single-molecule sequencing
AS Nanda, K Wu, S Kasinathan, MS Ostrowski, AS Clugston, AT Satpathy, ...
bioRxiv, 2022.08. 07.502893, 2022
12022
Correspondence: Reply to ‘DNA shape is insufficient to explain binding’
S Kasinathan, GE Zentner, B Xin, R Rohs, S Henikoff
Nature Communications 8 (1), 15644, 2017
12017
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