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Jeremie Kalfon
Jeremie Kalfon
the Broad Institute of MIT and Harvard | Whitelab Genomics
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
CaImAn: An open source tool for scalable Calcium Imaging data Analysis
A Giovannucci, J Friedrich, P Gunn, J Kalfon, SA Koay, J Taxidis, F Najafi, ...
eLife, 339564, 2018
6242018
Repeat expansions confer WRN dependence in microsatellite-unstable cancers
N van Wietmarschen, S Sridharan, WJ Nathan, A Tubbs, EM Chan, ...
Nature 586 (7828), 292-298, 2020
1082020
Synthetic lethal interaction between the ESCRT paralog enzymes VPS4A and VPS4B in cancers harboring loss of chromosome 18q or 16q
JE Neggers, BR Paolella, A Asfaw, MV Rothberg, TA Skipper, A Yang, ...
Cell reports 33 (11), 2020
322020
A distinct core regulatory module enforces oncogene expression in KMT2A-rearranged leukemia
T Harada, Y Heshmati, J Kalfon, MW Perez, JX Ferrucio, J Ewers, ...
Genes & development 36 (5-6), 368-389, 2022
162022
Hidden patterns of codon usage bias across kingdoms
Y Deng, F de Lima Hedayioglu, J Kalfon, D Chu, T von der Haar
Journal of The Royal Society Interface 17 (163), 20190819, 2020
122020
Transcriptional Immunoediting of AML Cells after Allogeneic Hematopoietic Stem Cell Transplantation
K Eagle, T Harada, J Kalfon, M Perez, Y Heshmati, J Ewers, K Stegmaier, ...
Blood 138, 647, 2021
10*2021
Mapping the landscape of genetic dependencies in chordoma
T Sharifnia, MJ Wawer, A Goodale, Y Lee, M Kazachkova, JM Dempster, ...
Nature Communications 14 (1), 1933, 2023
62023
Hypoxic, glycolytic metabolism is a vulnerability of B-acute lymphoblastic leukemia-initiating cells
V Morris, D Wang, Z Li, W Marion, T Hughes, P Sousa, T Harada, SH Sui, ...
Cell reports 39 (4), 2022
52022
Rapid-kinetics degron benchmarking reveals off-target activities and mixed agonism-antagonism of MYB inhibitors
T Harada, MW Perez, J Kalfon, FD Braes, R Batley, K Eagle, B Nabet, ...
bioRxiv, 2023
22023
Leukemia core transcriptional circuitry is a sparsely interconnected hierarchy stabilized by incoherent feed-forward loops
T Harada, J Kalfon, MW Perez, K Eagle, FD Braes, R Batley, Y Heshmati, ...
bioRxiv, 2023
22023
Defining the landscape of cancer vulnerabilities that are engendered by germline genetic variation
S Misek, A Fultineer, J Kalfon, J Noorbakhsh, I Boyle, J Dempster, ...
Journal of Pharmacology and Experimental Therapeutics 385 (S3), 2023
1*2023
Core transcriptional regulatory circuitry in AML
T Harada, M Perez, J Kalfon, K Eagle, FD Braes, R Batley, K Stegmaier, ...
Cancer Research 83 (7_Supplement), 5749-5749, 2023
2023
Associations between structural variant signatures and drug sensitivity in cell lines
S Dalin, F Dubois, S Zhang, A Crane, J Kalfon, J Noorbakhsh, ...
Cancer Research 82 (12_Supplement), 2710-2710, 2022
2022
2001–PLASTICITY OF B-LYMPHOBLASTIC LEUKEMIA STEM CELLS
G Rowe, V Morris, D Wang, W Marion, T Hughes, P Sousa, T Harada, ...
Experimental Hematology 100, S28, 2021
2021
PyCUB: A Machine Exploration of the Codon Usage Bias
J Kalfon
University of Kent, School of Computing, 2018
2018
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Articles 1–15