| Comprehensive molecular portraits of human breast tumours Cancer Genome Atlas Network Nature 490 (7418), 61-70, 2012 | 8360* | 2012 |
| Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012 | 5525 | 2012 |
| Comprehensive genomic characterization of squamous cell lung cancers Cancer Genome Atlas Research Network Nature 489 (7417), 519, 2012 | 2870 | 2012 |
| The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools P Lamesch, TZ Berardini, D Li, D Swarbreck, C Wilks, R Sasidharan, ... Nucleic acids research 40 (D1), D1202-D1210, 2012 | 1746 | 2012 |
| The Arabidopsis Information Resource (TAIR): gene structure and function annotation D Swarbreck, C Wilks, P Lamesch, TZ Berardini, M Garcia-Hernandez, ... Nucleic acids research 36 (suppl_1), D1009-D1014, 2007 | 1075 | 2007 |
| Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019 | 205 | 2019 |
| The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data C Wilks, MS Cline, E Weiler, M Diehkans, B Craft, C Martin, D Murphy, ... Database 2014, 2014 | 149 | 2014 |
| Rail-RNA: scalable analysis of RNA-seq splicing and coverage A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ... Bioinformatics 33 (24), 4033-4040, 2017 | 66 | 2017 |
| Flexible expressed region analysis for RNA-seq with derfinder L Collado-Torres, A Nellore, AC Frazee, C Wilks, MI Love, B Langmead, ... Nucleic acids research 45 (2), e9-e9, 2017 | 61 | 2017 |
| Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples C Wilks, P Gaddipati, A Nellore, B Langmead Bioinformatics 34 (1), 114-116, 2017 | 25* | 2017 |
| ASCOT identifies key regulators of neuronal subtype-specific splicing JP Ling, C Wilks, R Charles, PJ Leavey, D Ghosh, L Jiang, CP Santiago, ... Nature communications 11 (1), 1-12, 2020 | 21 | 2020 |
| Recounting the FANTOM CAGE-associated transcriptome EL Imada, DF Sanchez, L Collado-Torres, C Wilks, T Matam, ... Genome research 30 (7), 1073-1081, 2020 | 9 | 2020 |
| Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce A Nellore, C Wilks, KD Hansen, JT Leek, B Langmead Bioinformatics 32 (16), 2551-2553, 2016 | 8* | 2016 |
| A fast shotgun assembly heuristic C Wilks, S Khuri 2005 IEEE Computational Systems Bioinformatics Conference-Workshops (CSBW'05 …, 2005 | 7 | 2005 |
| Integrated transcriptomic and proteomic analysis of primary human umbilical vein endothelial cells AK Madugundu, CH Na, RS Nirujogi, S Renuse, KP Kim, KH Burns, ... Proteomics 19 (15), 1800315, 2019 | 5 | 2019 |
| Megadepth: efficient coverage quantification for BigWigs and BAMs C Wilks, O Ahmed, DN Baker, D Zhang, L Collado-Torres, B Langmead Bioinformatics 37 (18), 3014-3016, 2021 | 4 | 2021 |
| Cghub: Kick-starting the worldwide genome web C Wilks, D Maltbie, M Diekhans, D Haussler Proc. Asia Pac. Adv. Netw 35, 1-13, 2013 | 4 | 2013 |
| recount3: summaries and queries for large-scale RNA-seq expression and splicing C Wilks, SC Zheng, FY Chen, R Charles, B Solomon, JP Ling, EL Imada, ... bioRxiv, 2021 | 1 | 2021 |
| LongTron: Automated Analysis of Long Read Spliced Alignment Accuracy C Wilks, MC Schatz bioRxiv, 2020 | 1 | 2020 |
| Differential analysis of gene expression across the human genome using recount2 and FANTOM-CAT E Luidy-Imada, T Matam, L Collado-Torres, W Dinalankara, A Stupnikov, ... Cancer Research 78 (13 Supplement), 2297-2297, 2018 | 1 | 2018 |
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityVerified email at cs.jhu.edu
