| Advanced methods of microscope control using μManager software AD Edelstein, MA Tsuchida, N Amodaj, H Pinkard, RD Vale, N Stuurman Journal of biological methods 1 (2), 2014 | 1750 | 2014 |
| Deep learning for single-shot autofocus microscopy H Pinkard, Z Phillips, A Babakhani, DA Fletcher, L Waller Optica 6 (6), 794-797, 2019 | 126 | 2019 |
| Quantitative clonal analysis and single-cell transcriptomics reveal division kinetics, hierarchy, and fate of oral epithelial progenitor cells KB Jones, S Furukawa, P Marangoni, H Ma, H Pinkard, R D’Urso, ... Cell stem cell 24 (1), 183-192. e8, 2019 | 73 | 2019 |
| Pycro-Manager: open-source software for customized and reproducible microscope control H Pinkard, N Stuurman, IE Ivanov, NM Anthony, W Ouyang, B Li, B Yang, ... Nature methods 18 (3), 226-228, 2021 | 65 | 2021 |
| Micro-Magellan: open-source, sample-adaptive, acquisition software for optical microscopy H Pinkard, N Stuurman, K Corbin, R Vale, MF Krummel Nature methods 13 (10), 807-809, 2016 | 27 | 2016 |
| Learned adaptive multiphoton illumination microscopy for large-scale immune response imaging H Pinkard, H Baghdassarian, A Mujal, E Roberts, KH Hu, DH Friedman, ... Nature communications 12 (1), 1916, 2021 | 18 | 2021 |
| Tracking the spatial and functional gradient of monocyte-to-macrophage differentiation in inflamed lung D Sen, SM Jones, EM Oswald, H Pinkard, K Corbin, MF Krummel PLoS One 11 (10), e0165064, 2016 | 17 | 2016 |
| Image denoising for fluorescence microscopy by supervised to self-supervised transfer learning Y Wang, H Pinkard, E Khwaja, S Zhou, L Waller, B Huang Optics Express 29 (25), 41303-41312, 2021 | 13 | 2021 |
| Spatiotemporal rank filtering improves image quality compared to frame averaging in 2-photon laser scanning microscopy H Pinkard, K Corbin, MF Krummel PloS one 11 (3), e0150430, 2016 | 10 | 2016 |
| Limb phase flexibility in walking: a test case in the squirrel monkey (Saimiri sciureus) CE Miller, LE Johnson, H Pinkard, P Lemelin, D Schmitt Frontiers in zoology 16, 1-13, 2019 | 8 | 2019 |
| Image denoising for fluorescence microscopy by self-supervised transfer learning Y Wang, H Pinkard, E Khwaja, S Zhou, L Waller, B Huang bioRxiv, 2021.02. 01.429188, 2021 | 7 | 2021 |
| Assessing and benchmarking multiphoton microscopes for biologists K Corbin, H Pinkard, S Peck, P Beemiller, MF Krummel Methods in cell biology 123, 135-151, 2014 | 6 | 2014 |
| Microscopes are coming for your job H Pinkard, L Waller Nature Methods 19 (10), 1175-1176, 2022 | 5 | 2022 |
| A visual introduction to information theory H Pinkard, L Waller arXiv preprint arXiv:2206.07867, 2022 | 4 | 2022 |
| Single-shot autofocus microscopy using deep learning H Pinkard, Z Phillips, A Babakhani, DA Fletcher, L Waller Biorxiv, 587485, 2019 | 4 | 2019 |
| Pycro-manager: Open-source software for integrated microscopy hardware control and image processing H Pinkard, N Stuurman, L Waller arXiv preprint arXiv:2006.11330, 2020 | 3 | 2020 |
| Learned adaptive multiphoton illumination microscopy H Pinkard, H Baghdassarian, A Mujal, E Roberts, KH Hu, DH Friedman, ... bioRxiv, 2020.08. 14.251314, 2020 | 1 | 2020 |
| The mechanics of acceleration and deceleration in primate quadrupeds: implications for primate locomotor evolution. H Pinkard, D Schmitt, LE Johnson, CE Miller The FASEB Journal 27, 755.12-755.12, 2013 | 1 | 2013 |
| One-to-many randomizing interference microscope H Pinkard US Patent 11,954,172, 2024 | | 2024 |
| The Berkeley Single Cell Computational Microscopy (BSCCM) Dataset H Pinkard, C Liu, F Nyatigo, DA Fletcher, L Waller arXiv preprint arXiv:2402.06191, 2024 | | 2024 |
