| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature Microbiology, 2020 | 425* | 2020 |
| GToTree: a user-friendly workflow for phylogenomics MD Lee Bioinformatics, 2019 | 331 | 2019 |
| Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community L Momper, SP Jungbluth, MD Lee, JP Amend The ISME journal 11 (10), 2319-2333, 2017 | 132 | 2017 |
| Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean NG Walworth, FX Fu, EA Webb, MA Saito, D Moran, MR Mcllvin, MD Lee, ... Nature communications 7 (1), 12081, 2016 | 87 | 2016 |
| The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions MD Lee, NG Walworth, EL McParland, FX Fu, TJ Mincer, NM Levine, ... The ISME journal 11 (8), 1813-1824, 2017 | 73 | 2017 |
| Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, M Jochum, Y Liu, RAL Elworth, Q Wang, D Albin, ... Genome Research, gr. 268961.120, 2021 | 54* | 2021 |
| Microbial communities on seafloor basalts at Dorado Outcrop reflect level of alteration and highlight global lithic clades MD Lee, NG Walworth, JB Sylvan, KJ Edwards, BN Orcutt Frontiers in microbiology 6, 170496, 2015 | 53 | 2015 |
| Molecular and physiological evidence of genetic assimilation to high CO2 in the marine nitrogen fixer Trichodesmium NG Walworth, MD Lee, FX Fu, DA Hutchins, EA Webb Proceedings of the National Academy of Sciences 113 (47), E7367-E7374, 2016 | 48 | 2016 |
| Genomic mosaicism underlies the adaptation of marine Synechococcus ecotypes to distinct oceanic iron niches NA Ahlgren, BS Belisle, MD Lee Environmental Microbiology 22 (5), 1801-1815, 2020 | 36 | 2020 |
| Assessing marine microbial induced corrosion at Santa Catalina Island, California GA Ramírez, CL Hoffman, MD Lee, RA Lesniewski, RA Barco, A Garber, ... Frontiers in Microbiology 7, 216235, 2016 | 35 | 2016 |
| Jellyfish life stages shape associated microbial communities, while a core microbiome is maintained across all MD Lee, JD Kling, J Ceh Frontiers in Microbiology 9, 374334, 2018 | 34 | 2018 |
| Nutrient-colimited Trichodesmium as a nitrogen source or sink in a future ocean NG Walworth, FX Fu, MD Lee, X Cai, MA Saito, EA Webb, DA Hutchins Applied and environmental microbiology 84 (3), e02137-17, 2018 | 34 | 2018 |
| Transient exposure to novel high temperatures reshapes coastal phytoplankton communities DA Kling, J.D., Lee, M.D., Fu, F-X., Phan, M.D., Wang, X., Qu, P., Hutchins The ISME Journal, 2019 | 32* | 2019 |
| Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content MD Lee, NA Ahlgren, JD Kling, NG Walworth, G Rocap, MA Saito, ... Environmental Microbiology, 2019 | 29 | 2019 |
| Transcriptional activities of the microbial consortium living with the marine nitrogen-fixing cyanobacterium Trichodesmium reveal potential roles in community-level nitrogen … MD Lee, EA Webb, NG Walworth, FX Fu, NA Held, MA Saito, DA Hutchins Applied and environmental microbiology 84 (1), e02026-17, 2018 | 26 | 2018 |
| Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics JA Day, C Diener, AE Otwell, KE Tams, B Bebout, AM Detweiler, MD Lee, ... Plos one 16 (2), e0247534, 2021 | 25* | 2021 |
| Happy Belly Bioinformatics: an open-source resource dedicated to helping biologists utilize bioinformatics MD Lee The Journal of Open-Source Education, 2019 | 25 | 2019 |
| NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data EG Overbey, AM Saravia-Butler, Z Zhang, KS Rathi, H Fogle, ... Iscience 24 (4), 2021 | 21 | 2021 |
| The hunt for ancient prions: archaeal prion-like domains form amyloid-based epigenetic elements T Zajkowski, MD Lee, SS Mondal, A Carbajal, R Dec, PD Brennock, ... Molecular Biology and Evolution 38 (5), 2088-2103, 2021 | 20 | 2021 |
| Metabolomics As an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers L Seyler, EB Kujawinski, A Azua-Bustos, MD Lee, J Marlow, SM Perl, ... Astrobiology 20 (10), 1251-1261, 2020 | 18 | 2020 |
