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Mikel Hernaez
Mikel Hernaez
Center for Applied Medical Research (CIMA), University of Navarra
Verified email at unav.es - Homepage
Title
Cited by
Cited by
Year
Sentieon DNASeq variant calling workflow demonstrates strong computational performance and accuracy
KI Kendig, S Baheti, MA Bockol, TM Drucker, SN Hart, JR Heldenbrand, ...
Frontiers in genetics 10, 736, 2019
1422019
Effect of lossy compression of quality scores on variant calling
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
Briefings in bioinformatics 18 (2), 183-194, 2017
822017
QVZ: lossy compression of quality values
G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman
Bioinformatics 31 (19), 3122-3129, 2015
792015
SPRING: a next-generation compressor for FASTQ data
S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman
Bioinformatics 35 (15), 2674-2676, 2019
782019
Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver
UV Chembazhi, S Bangru, M Hernaez, A Kalsotra
Genome research 31 (4), 576-591, 2021
562021
iDoComp: a compression scheme for assembled genomes
I Ochoa, M Hernaez, T Weissman
Bioinformatics 31 (5), 626-633, 2014
512014
FaStore: a space-saving solution for raw sequencing data
Ł Roguski, I Ochoa, M Hernaez, S Deorowicz
Bioinformatics 34 (16), 2748-2756, 2018
502018
Genomic data compression
M Hernaez, D Pavlichin, T Weissman, I Ochoa
Annual Review of Biomedical Data Science 2, 19-37, 2019
482019
Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples
H Zheng, K Brennan, M Hernaez, O Gevaert
Gigascience 8 (12), giz145, 2019
412019
An introduction to mpeg-g: the first open iso/iec standard for the compression and exchange of genomic sequencing data
J Voges, M Hernaez, M Mattavelli, J Ostermann
Proceedings of the IEEE 109 (9), 1607-1622, 2021
32*2021
CAR density influences antitumoral efficacy of BCMA CAR T cells and correlates with clinical outcome
P Rodriguez-Marquez, ME Calleja-Cervantes, G Serrano, A Oliver-Caldes, ...
Science Advances 8 (39), eabo0514, 2022
292022
CALQ: compression of quality values of aligned sequencing data
J Voges, J Ostermann, M Hernaez
Bioinformatics 34 (10), 1650-1658, 2018
242018
Cell-type specific polysome profiling from mammalian tissues
J Seimetz, W Arif, S Bangru, M Hernaez, A Kalsotra
Methods 155, 131-139, 2019
192019
GTRAC: fast retrieval from compressed collections of genomic variants
K Tatwawadi, M Hernaez, I Ochoa, T Weissman
Bioinformatics 32 (17), i479-i486, 2016
192016
Aligned genomic data compression via improved modeling
I Ochoa, M Hernaez, T Weissman
Journal of bioinformatics and computational biology 12 (06), 1442002, 2014
192014
An evaluation framework for lossy compression of genome sequencing quality values
C Alberti, N Daniels, M Hernaez, J Voges, RL Goldfeder, ...
2016 Data Compression Conference (DCC), 221-230, 2016
182016
On the design of a novel joint network-channel coding scheme for the multiple access relay channel
M Hernaez, PM Crespo, J Del Ser
IEEE Journal on Selected Areas in Communications 31 (8), 1368-1378, 2012
172012
Microglia and astrocyte activation is region‐dependent in the α‐synuclein mouse model of Parkinson's disease
L Basurco, MA Abellanas, L Ayerra, E Conde, R Vinueza‐Gavilanes, ...
Glia 71 (3), 571-587, 2023
162023
Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single cell resolution
M Ainciburu, T Ezponda, N Berastegui, A Alfonso-Pierola, ...
Elife 12, e79363, 2023
152023
A cluster-based approach to compression of quality scores
M Hernaez, I Ochoa, T Weissman
2016 Data Compression Conference (DCC), 261-270, 2016
152016
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Articles 1–20