| Direct cell reprogramming: approaches, mechanisms and progress H Wang, Y Yang, J Liu, L Qian Nature Reviews Molecular Cell Biology 22, 410–424, 2021 | 228 | 2021 |
| SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data Y Yang, R Huh, H Culpepper, Y Lin, M Love, Y Li Bioinformatics 35 (8), 1269-1277, 2019 | 106 | 2019 |
| MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ... PLoS Computational Biology 15 (4), e1006982, 2019 | 98 | 2019 |
| Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data Y Yang, H Sun, Y Zhang, T Zhang, J Gong, Y Wei, YG Duan, M Shu, ... Cell Reports 36 (4), 109442, 2021 | 78 | 2021 |
| SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble R Huh, Y Yang, Y Jiang, Y Shen, Y Li Nucleic Acids Research 48 (1), 86-95, 2020 | 60 | 2020 |
| Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits P Giusti-Rodríguez, L Lu, Y Yang, CA Crowley, X Liu, I Juric, JS Martin, ... BioRxiv, 406330, 2018 | 60 | 2018 |
| Common variants contribute to intrinsic human brain functional networks B Zhao, T Li, SM Smith, D Xiong, X Wang, Y Yang, T Luo, Z Zhu, Y Shan, ... Nature Genetics 54, 508–517, 2022 | 53 | 2022 |
| Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses Z Guo, X Li, Z He, Y Yang, W Wang, C Zhong, AJ Greenberg, CI Wu, ... Global Change Biology 24 (4), 1741–1748, 2018 | 49 | 2018 |
| SnapHiC: a computational pipeline to identify chromatin loops from single cell Hi-C data M Yu, A Abnousi, Y Zhang, G Li, L Lee, Z Chen, R Fang, T Lagler, Y Yang, ... Nature Methods 18, 1056–1059, 2021 | 48 | 2021 |
| Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: A lesson from Sonneratia alba Y Yang, J Li, S Yang, X Li, L Fang, C Zhong, NC Duke, R Zhou, S Shi BMC Evolutionary Biology 17, 22, 2017 | 46 | 2017 |
| Down-regulation of Beclin1 promotes direct cardiac reprogramming L Wang, H Ma, P Huang, Y Xie, D Near, H Wang, J Xu, Y Yang, Y Xu, ... Science Translational Medicine 12 (566), eaay7856, 2020 | 44 | 2020 |
| Re-Evaluation of Phylogenetic Relationships among Species of the Mangrove Genus Avicennia from Indo-West Pacific Based on Multilocus Analyses X Li, NC Duke, Y Yang, L Huang, Y Zhu, Z Zhang, R Zhou, C Zhong, ... PLoS ONE 11 (10), e0164453, 2016 | 41 | 2016 |
| Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones Y Yang, S Yang, J Li, Y Deng, Z Zhang, S Xu, W Guo, C Zhong, R Zhou, ... BMC Genomics 16, 605, 2015 | 40 | 2015 |
| The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation Y Yang, Y Li, A Sancar, O Oztas Journal of Biological Chemistry 295 (22), 7608-7619, 2020 | 37 | 2020 |
| Single Cell Dual-Omics Reveals the Transcriptomic and Epigenomic Diversity of Cardiac Non-myocytes L Wang, Y Yang, H Ma, Y Xie, J Xu, D Near, H Wang, T Garbutt, Y Li, J Liu, ... Cardiovascular Research 118, 1548–1563, 2021 | 33 | 2021 |
| Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba X Feng, S Xu, J Li, Y Yang, Q Chen, H Lyu, C Zhong, Z He, S Shi BMC Plant Biology 20, 178, 2020 | 33 | 2020 |
| Molecular dissection of cadmium-responsive transcriptome profile in a low-cadmium-accumulating cultivar of Brassica parachinensis Q Zhou, Y Yang, Z Yang Ecotoxicology and Environmental Safety 176, 85-94, 2019 | 33 | 2019 |
| Mucosal Associated Invariant T (MAIT) Cell Responses Differ by Sex in COVID-19 C Yu, S Littleton, N Giroux, R Mathew, S Ding, J Kalnitsky, Y Yang, ... Med 2 (6), 755-772, 2021 | 31 | 2021 |
| Comparative analysis between low- and high-cadmium-accumulating cultivars of Brassica parachinensis to identify difference of cadmium-induced microRNA and their targets Q Zhou, YC Yang, C Shen, CT He, JG Yuan, ZY Yang Plant and Soil 420 (1-2), 223-237, 2017 | 31 | 2017 |
| Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum Z Zhang, Z He, S Xu, X Li, W Guo, Y Yang, C Zhong, R Zhou, S Shi Scientific Reports 6, 35634, 2016 | 28 | 2016 |
Yun LiUniversity of North CarolinaVerified email at med.unc.edu
