| Evaluating protein transfer learning with TAPE R Rao, N Bhattacharya, N Thomas, Y Duan, P Chen, J Canny, P Abbeel, ... Advances in neural information processing systems 32, 2019 | 753 | 2019 |
| Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ... Science advances 5 (12), eaax5727, 2019 | 137 | 2019 |
| Differences in the path to exit the ribosome across the three domains of life K Dao Duc, SS Batra, N Bhattacharya, JHD Cate, YS Song Nucleic acids research 47 (8), 4198-4210, 2019 | 91 | 2019 |
| FLIP: Benchmark tasks in fitness landscape inference for proteins C Dallago, J Mou, KE Johnston, BJ Wittmann, N Bhattacharya, S Goldman, ... bioRxiv, 2021.11. 09.467890, 2021 | 72 | 2021 |
| Interpreting potts and transformer protein models through the lens of simplified attention N Bhattacharya, N Thomas, R Rao, J Dauparas, PK Koo, D Baker, ... PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 34-45, 2021 | 35* | 2021 |
| Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity A Crits-Christoph, N Bhattacharya, MR Olm, YS Song, JF Banfield Genome research 31 (2), 239-250, 2021 | 29 | 2021 |
| End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman S Petti, N Bhattacharya, R Rao, J Dauparas, N Thomas, J Zhou, AM Rush, ... Bioinformatics 39 (1), btac724, 2023 | 24 | 2023 |
| Flip: Benchmark tasks in fitness landscape inference for proteins. bioRxiv C Dallago, J Mou, KE Johnston, BJ Wittmann, N Bhattacharya, S Goldman, ... preprint, 2021 | 15 | 2021 |
| Time-inhomogeneous branching processes conditioned on non-extinction N Bhattacharya, M Perlman arXiv preprint arXiv:1703.00337, 2017 | 12 | 2017 |
| Deep self-supervised learning for biosynthetic gene cluster detection and product classification C Rios-Martinez, N Bhattacharya, AP Amini, L Crawford, KK Yang PLOS Computational Biology 19 (5), e1011162, 2023 | 8 | 2023 |
| Randomized gates eliminate bias in sort‐seq assays BL Trippe, B Huang, EA DeBenedictis, B Coventry, N Bhattacharya, ... Protein Science 31 (9), e4401, 2022 | 7 | 2022 |
| Unbiased sorting and sequencing of objects via randomized gating schemes BL Trippe, LA Crawford, KK Yang, N Bhattacharya US Patent App. 17/532,583, 2023 | | 2023 |
