| The National COVID Cohort Collaborative (N3C): rationale, design, infrastructure, and deployment MA Haendel, CG Chute, TD Bennett, DA Eichmann, J Guinney, WA Kibbe, ... Journal of the American Medical Informatics Association 28 (3), 427-443, 2021 | 417 | 2021 |
| Assessing De Novo transcriptome assembly metrics for consistency and utility ST O’Neil, SJ Emrich BMC genomics 14, 1-12, 2013 | 148 | 2013 |
| Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon ST O'Neil, JDK Dzurisin, RD Carmichael, NF Lobo, SJ Emrich, ... BMC genomics 11, 1-15, 2010 | 145 | 2010 |
| A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc Journal of Experimental Botany 65 (20), 5889-5902, 2014 | 59 | 2014 |
| Association of early aspirin use with in-hospital mortality in patients with moderate COVID-19 JH Chow, A Rahnavard, M Gomberg-Maitland, R Chatterjee, P Patodi, ... JAMA network open 5 (3), e223890-e223890, 2022 | 47 | 2022 |
| Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient SF Ryan, MC Fontaine, JM Scriber, ME Pfrender, ST O'Neil, JJ Hellmann Molecular ecology 26 (18), 4725-4742, 2017 | 30 | 2017 |
| Newsvendor problems with demand shocks and unknown demand distributions S O'Neil, X Zhao, D Sun, JC Wei Decision Sciences 47 (1), 125-156, 2016 | 29 | 2016 |
| Post-recovery COVID-19 and incident heart failure in the National COVID Cohort Collaborative (N3C) study HM Salah, M Fudim, ST O’Neil, A Manna, CG Chute, MC Caughey Nature communications 13 (1), 4117, 2022 | 28 | 2022 |
| Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world ST O'Neil, JDK Dzurisin, CM Williams, NF Lobo, JK Higgins, JM Deines, ... Molecular ecology 23 (11), 2686-2698, 2014 | 27 | 2014 |
| Haplotype and minimum-chimerism consensus determination using short sequence data ST O'Neil, SJ Emrich BMC genomics 13, 1-12, 2012 | 26 | 2012 |
| Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment AS Fister, ST O’Neil, Z Shi, Y Zhang, BM Tyler, MJ Guiltinan, ... Journal of experimental botany 66 (20), 6245-6258, 2015 | 24 | 2015 |
| The characterization of the Phlebotomus papatasi transcriptome J Abrudan, M Ramalho‐Ortigão, S O'Neil, G Stayback, M Wadsworth, ... Insect molecular biology 22 (2), 211-232, 2013 | 23 | 2013 |
| Risk for stillbirth among pregnant individuals with SARS-CoV-2 infection varied by gestational age T Lyu, C Liang, J Liu, P Hung, J Zhang, B Campbell, N Ghumman, ... American journal of obstetrics and gynecology 229 (3), 288. e1-288. e13, 2023 | 11 | 2023 |
| Robust haplotype reconstruction of eukaryotic read data with Hapler ST O'Neil, SJ Emrich 2011 IEEE 1st International Conference on Computational Advances in Bio and …, 2011 | 9 | 2011 |
| A k-mer based transcriptomics approach for antisense drug discovery targeting the Ewing’s family of tumors AJ Annalora, S O’Neil, JD Bushman, JE Summerton, CB Marcus, ... Oncotarget 9 (55), 30568, 2018 | 7 | 2018 |
| Comparing online learning algorithms to stochastic approaches for the multi-period newsvendor problem S O'Neil, A Chaudhary 2008 Proceedings of the Tenth Workshop on Algorithm Engineering and …, 2008 | 7 | 2008 |
| Accurate transcription start sites enable mining for the cis-regulatory determinants of tissue specific gene expression M Ansariola, VN Fraser, SA Filichkin, MG Ivanchenko, ZA Bright, ... BioRxiv, 2020.09. 01.278424, 2020 | 3 | 2020 |
| A Primer for Computational Biology ST O'Neil Oregon State University Press, 2017 | 3 | 2017 |
| Implementing Persistent O (1) Stacks and Queues in R ST O’Neil R JOURNAL 7 (1), 118-126, 2015 | 3 | 2015 |
| Hormone replacement therapy and COVID-19 outcomes in solid organ transplant recipients compared with the general population AJ Vinson, A Anzalone, M Schissel, R Dai, ET French, AL Olex, ... American journal of transplantation 23 (7), 1035-1047, 2023 | 1 | 2023 |
